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make-check-gcc6.log

Szilárd Páll, 01/31/2019 12:26 AM

 
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Making install in vsx
893
Making install in neon
894
Making install in generic-simd128
895
Making install in generic-simd256
896
Making install in rdft
897
Making install in scalar
898
Making install in r2cf
899
Making install in r2cb
900
Making install in r2r
901
Making install in simd
902
Making install in common
903
Making install in sse2
904
Making install in avx
905
Making install in avx-128-fma
906
Making install in avx2
907
Making install in avx2-128
908
Making install in avx512
909
Making install in kcvi
910
Making install in altivec
911
Making install in vsx
912
Making install in neon
913
Making install in generic-simd128
914
Making install in generic-simd256
915
Making install in reodft
916
Making install in api
917
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918
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919
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920
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921
Making install in libbench2
922
Making install in .
923
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924
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925
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926
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927
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928
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929
libtool: install: /usr/bin/install -c .libs/libfftw3f.lai /home/localadmin/gromacs/build_gcc6/src/external/build-fftw/fftwBuild-prefix/lib/libfftw3f.la
930
libtool: install: /usr/bin/install -c .libs/libfftw3f.a /home/localadmin/gromacs/build_gcc6/src/external/build-fftw/fftwBuild-prefix/lib/libfftw3f.a
931
libtool: install: chmod 644 /home/localadmin/gromacs/build_gcc6/src/external/build-fftw/fftwBuild-prefix/lib/libfftw3f.a
932
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933
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934
----------------------------------------------------------------------
935
Libraries have been installed in:
936
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937

    
938
If you ever happen to want to link against installed libraries
939
in a given directory, LIBDIR, you must either use libtool, and
940
specify the full pathname of the library, or use the '-LLIBDIR'
941
flag during linking and do at least one of the following:
942
   - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
943
     during execution
944
   - add LIBDIR to the 'LD_RUN_PATH' environment variable
945
     during linking
946
   - use the '-Wl,-rpath -Wl,LIBDIR' linker flag
947
   - have your system administrator add LIBDIR to '/etc/ld.so.conf'
948

    
949
See any operating system documentation about shared libraries for
950
more information, such as the ld(1) and ld.so(8) manual pages.
951
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952
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953
Making install in tests
954
Making install in mpi
955
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956
Making install in FAQ
957
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958
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959
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960
Making install in tools
961
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962
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963
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964
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965
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966
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967
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968
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969
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970
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971
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974
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1438
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1441
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1442
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1443
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1444
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1445
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1446
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1447
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1448
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1449
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1450
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1452
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1453
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1454
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1461
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1462
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1465
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1467
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1468
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1469
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1471
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1472
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1473
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1474
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1475
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1476
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1477
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1478
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1479
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1480
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1481
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1482
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1483
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1484
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1485
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1486
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1487
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1488
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1489
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1490
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1491
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1492
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1493
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1494
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1495
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1496
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1497
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1500
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1501
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1502
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1503
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1504
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1505
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1506
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1507
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1508
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1509
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1510
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1511
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1512
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1513
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1514
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1515
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1516
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1517
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1518
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1519
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1520
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1521
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1522
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1523
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1524
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1525
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1526
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1527
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1528
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1529
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1530
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1531
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1532
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1533
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1534
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1535
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1539
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[ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o
1944
[ 95%] Linking CXX executable ../../../../bin/analysisdata-test
1945
[ 95%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o
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[ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o
1947
[ 96%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o
1948
[ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o
1949
[ 97%] Built target analysisdata-test
1950
[ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o
1951
[ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o
1952
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1953
[ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o
1954
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1955
[ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o
1956
[ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o
1957
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1958
[ 97%] Linking CXX executable ../../../../bin/random-test
1959
[ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/mimic.cpp.o
1960
[ 97%] Built target random-test
1961
[ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o
1962
[ 97%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o
1963
[ 97%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o
1964
[ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o
1965
[ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o
1966
[ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o
1967
[ 98%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o
1968
[ 98%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o
1969
[ 98%] Linking CXX executable ../../../../bin/trajectoryanalysis-test
1970
[ 98%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o
1971
[ 98%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o
1972
[ 98%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o
1973
[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o
1974
[ 98%] Built target trajectoryanalysis-test
1975
[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o
1976
[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o
1977
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o
1978
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o
1979
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/gmxregex.cpp.o
1980
[100%] Linking CXX executable ../../../../bin/math-test
1981
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o
1982
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o
1983
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o
1984
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o
1985
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o
1986
[100%] Built target math-test
1987
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o
1988
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o
1989
[100%] Linking CXX executable ../../../../bin/mdrun-test
1990
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o
1991
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o
1992
[100%] Built target mdrun-test
1993
[100%] Linking CXX executable ../../../../bin/simd-test
1994
[100%] Linking CXX executable ../../../../bin/mdlib-test
1995
[100%] Built target simd-test
1996
[100%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test
1997
[100%] Built target mdlib-test
1998
[100%] Built target mdrun-non-integrator-test
1999
[100%] Linking CXX executable ../../../../bin/ewald-test
2000
[100%] Linking CXX executable ../../../../bin/commandline-test
2001
[100%] Built target ewald-test
2002
[100%] Built target commandline-test
2003
[100%] Linking CXX executable ../../../../bin/options-test
2004
[100%] Linking CXX executable ../../../../bin/selection-test
2005
[100%] Built target options-test
2006
[100%] Built target selection-test
2007
[100%] Linking CXX executable ../../../../bin/utility-test
2008
[100%] Built target utility-test
2009
[100%] Built target tests
2010
[100%] Running all tests except physical validation
2011
Test project /home/localadmin/gromacs/build_gcc6
2012
      Start  1: TestUtilsUnitTests
2013
 1/46 Test  #1: TestUtilsUnitTests ..................   Passed    0.02 sec
2014
      Start  2: TestUtilsMpiUnitTests
2015
 2/46 Test  #2: TestUtilsMpiUnitTests ...............   Passed    0.00 sec
2016
      Start  3: MdlibUnitTest
2017
 3/46 Test  #3: MdlibUnitTest .......................   Passed    0.01 sec
2018
      Start  4: AppliedForcesUnitTest
2019
 4/46 Test  #4: AppliedForcesUnitTest ...............   Passed    0.00 sec
2020
      Start  5: ListedForcesTest
2021
 5/46 Test  #5: ListedForcesTest ....................   Passed    0.00 sec
2022
      Start  6: CommandLineUnitTests
2023
 6/46 Test  #6: CommandLineUnitTests ................   Passed    0.01 sec
2024
      Start  7: DomDecTests
2025
 7/46 Test  #7: DomDecTests .........................   Passed    0.00 sec
2026
      Start  8: EwaldUnitTests
2027
 8/46 Test  #8: EwaldUnitTests ......................   Passed    0.59 sec
2028
      Start  9: FFTUnitTests
2029
 9/46 Test  #9: FFTUnitTests ........................   Passed    0.03 sec
2030
      Start 10: GpuUtilsUnitTests
2031
10/46 Test #10: GpuUtilsUnitTests ...................   Passed    0.01 sec
2032
      Start 11: HardwareUnitTests
2033
11/46 Test #11: HardwareUnitTests ...................   Passed    0.54 sec
2034
      Start 12: MathUnitTests
2035
12/46 Test #12: MathUnitTests .......................   Passed    0.01 sec
2036
      Start 13: MdrunUtilityUnitTests
2037
13/46 Test #13: MdrunUtilityUnitTests ...............   Passed    0.01 sec
2038
      Start 14: MdrunUtilityMpiUnitTests
2039
14/46 Test #14: MdrunUtilityMpiUnitTests ............   Passed    0.01 sec
2040
      Start 15: OnlineHelpUnitTests
2041
15/46 Test #15: OnlineHelpUnitTests .................   Passed    0.01 sec
2042
      Start 16: OptionsUnitTests
2043
16/46 Test #16: OptionsUnitTests ....................   Passed    0.01 sec
2044
      Start 17: RandomUnitTests
2045
17/46 Test #17: RandomUnitTests .....................   Passed    0.01 sec
2046
      Start 18: RestraintTests
2047
18/46 Test #18: RestraintTests ......................   Passed    0.00 sec
2048
      Start 19: TableUnitTests
2049
19/46 Test #19: TableUnitTests ......................   Passed    0.20 sec
2050
      Start 20: TaskAssignmentUnitTests
2051
20/46 Test #20: TaskAssignmentUnitTests .............   Passed    0.00 sec
2052
      Start 21: UtilityUnitTests
2053
21/46 Test #21: UtilityUnitTests ....................   Passed    0.02 sec
2054
      Start 22: UtilityMpiUnitTests
2055
22/46 Test #22: UtilityMpiUnitTests .................   Passed    0.00 sec
2056
      Start 23: FileIOTests
2057
23/46 Test #23: FileIOTests .........................   Passed    0.01 sec
2058
      Start 24: PullTest
2059
24/46 Test #24: PullTest ............................   Passed    0.00 sec
2060
      Start 25: AwhTest
2061
25/46 Test #25: AwhTest .............................   Passed    0.01 sec
2062
      Start 26: SimdUnitTests
2063
26/46 Test #26: SimdUnitTests .......................   Passed    0.05 sec
2064
      Start 27: CompatibilityHelpersTests
2065
27/46 Test #27: CompatibilityHelpersTests ...........   Passed    0.00 sec
2066
      Start 28: GmxAnaTest
2067
28/46 Test #28: GmxAnaTest ..........................   Passed    0.03 sec
2068
      Start 29: GmxPreprocessTests
2069
29/46 Test #29: GmxPreprocessTests ..................   Passed    0.45 sec
2070
      Start 30: Pdb2gmxTest
2071
30/46 Test #30: Pdb2gmxTest .........................   Passed   29.85 sec
2072
      Start 31: CorrelationsTest
2073
31/46 Test #31: CorrelationsTest ....................   Passed    0.91 sec
2074
      Start 32: AnalysisDataUnitTests
2075
32/46 Test #32: AnalysisDataUnitTests ...............   Passed    0.11 sec
2076
      Start 33: SelectionUnitTests
2077
33/46 Test #33: SelectionUnitTests ..................   Passed    0.38 sec
2078
      Start 34: TrajectoryAnalysisUnitTests
2079
34/46 Test #34: TrajectoryAnalysisUnitTests .........   Passed    1.39 sec
2080
      Start 35: EnergyAnalysisUnitTests
2081
35/46 Test #35: EnergyAnalysisUnitTests .............   Passed    0.26 sec
2082
      Start 36: ToolUnitTests
2083
36/46 Test #36: ToolUnitTests .......................   Passed    0.51 sec
2084
      Start 37: MdrunTests
2085
37/46 Test #37: MdrunTests ..........................   Passed    5.16 sec
2086
      Start 38: MdrunNonIntegratorTests
2087
38/46 Test #38: MdrunNonIntegratorTests .............   Passed   20.60 sec
2088
      Start 39: LegacyGroupSchemeMdrunTests
2089
39/46 Test #39: LegacyGroupSchemeMdrunTests .........   Passed    1.14 sec
2090
      Start 40: MdrunMpiTests
2091
40/46 Test #40: MdrunMpiTests .......................   Passed    1.96 sec
2092
      Start 41: regressiontests/simple
2093
41/46 Test #41: regressiontests/simple ..............   Passed    7.90 sec
2094
      Start 42: regressiontests/complex
2095
42/46 Test #42: regressiontests/complex .............   Passed   96.08 sec
2096
      Start 43: regressiontests/kernel
2097
43/46 Test #43: regressiontests/kernel ..............   Passed   59.51 sec
2098
      Start 44: regressiontests/freeenergy
2099
44/46 Test #44: regressiontests/freeenergy ..........   Passed   31.26 sec
2100
      Start 45: regressiontests/rotation
2101
45/46 Test #45: regressiontests/rotation ............   Passed    5.14 sec
2102
      Start 46: regressiontests/essentialdynamics
2103
46/46 Test #46: regressiontests/essentialdynamics ...   Passed    8.22 sec
2104

    
2105
100% tests passed, 0 tests failed out of 46
2106

    
2107
Label Time Summary:
2108
GTest              =  64.37 sec*proc (40 tests)
2109
IntegrationTest    =  28.89 sec*proc (5 tests)
2110
MpiTest            =   0.02 sec*proc (3 tests)
2111
SlowTest           =  29.85 sec*proc (1 test)
2112
UnitTest           =   5.62 sec*proc (34 tests)
2113

    
2114
Total Test time (real) = 272.53 sec
2115
[100%] Built target run-ctest-nophys
2116
[100%] Built target check