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make-check-gcc7.log

Szilárd Páll, 01/31/2019 12:26 AM

 
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904
Making install in sse2
905
Making install in avx
906
Making install in avx-128-fma
907
Making install in avx2
908
Making install in avx2-128
909
Making install in avx512
910
Making install in kcvi
911
Making install in altivec
912
Making install in vsx
913
Making install in neon
914
Making install in generic-simd128
915
Making install in generic-simd256
916
Making install in reodft
917
Making install in api
918
 /bin/mkdir -p '/home/localadmin/gromacs/build_gcc7/src/external/build-fftw/fftwBuild-prefix/include'
919
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920
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921
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922
Making install in libbench2
923
Making install in .
924
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925
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926
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927
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928
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929
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930
libtool: install: /usr/bin/install -c .libs/libfftw3f.lai /home/localadmin/gromacs/build_gcc7/src/external/build-fftw/fftwBuild-prefix/lib/libfftw3f.la
931
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932
libtool: install: chmod 644 /home/localadmin/gromacs/build_gcc7/src/external/build-fftw/fftwBuild-prefix/lib/libfftw3f.a
933
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934
libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/sbin" ldconfig -n /home/localadmin/gromacs/build_gcc7/src/external/build-fftw/fftwBuild-prefix/lib
935
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936
Libraries have been installed in:
937
   /home/localadmin/gromacs/build_gcc7/src/external/build-fftw/fftwBuild-prefix/lib
938

    
939
If you ever happen to want to link against installed libraries
940
in a given directory, LIBDIR, you must either use libtool, and
941
specify the full pathname of the library, or use the '-LLIBDIR'
942
flag during linking and do at least one of the following:
943
   - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
944
     during execution
945
   - add LIBDIR to the 'LD_RUN_PATH' environment variable
946
     during linking
947
   - use the '-Wl,-rpath -Wl,LIBDIR' linker flag
948
   - have your system administrator add LIBDIR to '/etc/ld.so.conf'
949

    
950
See any operating system documentation about shared libraries for
951
more information, such as the ld(1) and ld.so(8) manual pages.
952
----------------------------------------------------------------------
953
Making install in threads
954
Making install in tests
955
Making install in mpi
956
Making install in doc
957
Making install in FAQ
958
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959
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960
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961
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962
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963
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964
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965
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966
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967
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968
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969
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970
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971
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1450
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1465
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1471
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1476
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1477
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1481
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1485
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1488
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1489
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1491
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1492
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1493
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1494
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1495
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1496
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1497
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1498
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1499
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1500
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1501
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1502
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1503
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1504
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1505
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1506
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1507
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1508
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1509
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1510
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1511
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1512
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1513
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1514
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1516
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1517
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1518
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1519
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1520
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1521
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1523
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1524
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1525
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1526
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1527
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1528
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1529
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1531
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1532
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1533
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1534
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1537
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1539
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1946
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1947
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1948
[ 96%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o
1949
[ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o
1950
[ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o
1951
[ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o
1952
[ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o
1953
[ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o
1954
[ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o
1955
[ 96%] Linking CXX executable ../../../../bin/analysisdata-test
1956
[ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/grompp.cpp.o
1957
[ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o
1958
[ 96%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o
1959
[ 96%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o
1960
[ 96%] Built target analysisdata-test
1961
[ 96%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o
1962
[ 96%] Linking CXX executable ../../../../bin/mdrun-mpi-test
1963
[ 96%] Linking CXX executable ../../../../bin/random-test
1964
[ 96%] Linking CXX executable ../../../../bin/legacy-mdrun-test
1965
[ 97%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o
1966
[ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o
1967
[ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o
1968
[ 98%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o
1969
[ 98%] Built target mdrun-mpi-test
1970
[ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o
1971
[ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o
1972
[ 98%] Built target random-test
1973
[ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o
1974
[ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o
1975
[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o
1976
[ 98%] Built target legacy-mdrun-test
1977
[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o
1978
[ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/pmetest.cpp.o
1979
[ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o
1980
[ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o
1981
[ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/termination.cpp.o
1982
[ 98%] Linking CXX executable ../../../../bin/math-test
1983
[ 98%] Linking CXX executable ../../../../bin/ewald-test
1984
[ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o
1985
[ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o
1986
[ 98%] Built target math-test
1987
[ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o
1988
[ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/mimic.cpp.o
1989
[ 98%] Built target ewald-test
1990
[ 98%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o
1991
[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o
1992
[ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o
1993
[ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o
1994
[ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o
1995
[100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o
1996
[100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o
1997
[100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o
1998
[100%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test
1999
[100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o
2000
[100%] Built target mdrun-non-integrator-test
2001
[100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o
2002
[100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o
2003
[100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o
2004
[100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o
2005
[100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o
2006
[100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o
2007
[100%] Linking CXX executable ../../../../bin/commandline-test
2008
[100%] Built target commandline-test
2009
[100%] Linking CXX executable ../../../../bin/mdrun-test
2010
[100%] Built target mdrun-test
2011
[100%] Linking CXX executable ../../../../bin/simd-test
2012
[100%] Built target simd-test
2013
[100%] Linking CXX executable ../../../../bin/selection-test
2014
[100%] Linking CXX executable ../../../../bin/trajectoryanalysis-test
2015
[100%] Built target selection-test
2016
[100%] Built target trajectoryanalysis-test
2017
[100%] Linking CXX executable ../../../../bin/options-test
2018
[100%] Built target options-test
2019
[100%] Linking CXX executable ../../../../bin/utility-test
2020
[100%] Built target utility-test
2021
[100%] Built target tests
2022
[100%] Running all tests except physical validation
2023
Test project /home/localadmin/gromacs/build_gcc7
2024
      Start  1: TestUtilsUnitTests
2025
 1/46 Test  #1: TestUtilsUnitTests ..................   Passed    0.08 sec
2026
      Start  2: TestUtilsMpiUnitTests
2027
 2/46 Test  #2: TestUtilsMpiUnitTests ...............   Passed    0.00 sec
2028
      Start  3: MdlibUnitTest
2029
 3/46 Test  #3: MdlibUnitTest .......................   Passed    0.01 sec
2030
      Start  4: AppliedForcesUnitTest
2031
 4/46 Test  #4: AppliedForcesUnitTest ...............   Passed    0.00 sec
2032
      Start  5: ListedForcesTest
2033
 5/46 Test  #5: ListedForcesTest ....................   Passed    0.00 sec
2034
      Start  6: CommandLineUnitTests
2035
 6/46 Test  #6: CommandLineUnitTests ................   Passed    0.01 sec
2036
      Start  7: DomDecTests
2037
 7/46 Test  #7: DomDecTests .........................   Passed    0.00 sec
2038
      Start  8: EwaldUnitTests
2039
 8/46 Test  #8: EwaldUnitTests ......................   Passed    0.90 sec
2040
      Start  9: FFTUnitTests
2041
 9/46 Test  #9: FFTUnitTests ........................   Passed    0.15 sec
2042
      Start 10: GpuUtilsUnitTests
2043
10/46 Test #10: GpuUtilsUnitTests ...................   Passed    0.03 sec
2044
      Start 11: HardwareUnitTests
2045
11/46 Test #11: HardwareUnitTests ...................   Passed    0.72 sec
2046
      Start 12: MathUnitTests
2047
12/46 Test #12: MathUnitTests .......................   Passed    0.05 sec
2048
      Start 13: MdrunUtilityUnitTests
2049
13/46 Test #13: MdrunUtilityUnitTests ...............   Passed    0.04 sec
2050
      Start 14: MdrunUtilityMpiUnitTests
2051
14/46 Test #14: MdrunUtilityMpiUnitTests ............   Passed    0.37 sec
2052
      Start 15: OnlineHelpUnitTests
2053
15/46 Test #15: OnlineHelpUnitTests .................   Passed    0.02 sec
2054
      Start 16: OptionsUnitTests
2055
16/46 Test #16: OptionsUnitTests ....................   Passed    0.04 sec
2056
      Start 17: RandomUnitTests
2057
17/46 Test #17: RandomUnitTests .....................   Passed    0.03 sec
2058
      Start 18: RestraintTests
2059
18/46 Test #18: RestraintTests ......................   Passed    0.01 sec
2060
      Start 19: TableUnitTests
2061
19/46 Test #19: TableUnitTests ......................   Passed    0.38 sec
2062
      Start 20: TaskAssignmentUnitTests
2063
20/46 Test #20: TaskAssignmentUnitTests .............   Passed    0.00 sec
2064
      Start 21: UtilityUnitTests
2065
21/46 Test #21: UtilityUnitTests ....................   Passed    0.02 sec
2066
      Start 22: UtilityMpiUnitTests
2067
22/46 Test #22: UtilityMpiUnitTests .................   Passed    0.00 sec
2068
      Start 23: FileIOTests
2069
23/46 Test #23: FileIOTests .........................   Passed    0.01 sec
2070
      Start 24: PullTest
2071
24/46 Test #24: PullTest ............................   Passed    0.00 sec
2072
      Start 25: AwhTest
2073
25/46 Test #25: AwhTest .............................   Passed    0.01 sec
2074
      Start 26: SimdUnitTests
2075
26/46 Test #26: SimdUnitTests .......................   Passed    0.05 sec
2076
      Start 27: CompatibilityHelpersTests
2077
27/46 Test #27: CompatibilityHelpersTests ...........   Passed    0.00 sec
2078
      Start 28: GmxAnaTest
2079
28/46 Test #28: GmxAnaTest ..........................   Passed    0.03 sec
2080
      Start 29: GmxPreprocessTests
2081
29/46 Test #29: GmxPreprocessTests ..................   Passed    0.38 sec
2082
      Start 30: Pdb2gmxTest
2083
30/46 Test #30: Pdb2gmxTest .........................   Passed   31.54 sec
2084
      Start 31: CorrelationsTest
2085
31/46 Test #31: CorrelationsTest ....................   Passed    0.34 sec
2086
      Start 32: AnalysisDataUnitTests
2087
32/46 Test #32: AnalysisDataUnitTests ...............   Passed    0.05 sec
2088
      Start 33: SelectionUnitTests
2089
33/46 Test #33: SelectionUnitTests ..................   Passed    0.19 sec
2090
      Start 34: TrajectoryAnalysisUnitTests
2091
34/46 Test #34: TrajectoryAnalysisUnitTests .........   Passed    0.65 sec
2092
      Start 35: EnergyAnalysisUnitTests
2093
35/46 Test #35: EnergyAnalysisUnitTests .............   Passed    0.10 sec
2094
      Start 36: ToolUnitTests
2095
36/46 Test #36: ToolUnitTests .......................   Passed    0.22 sec
2096
      Start 37: MdrunTests
2097
37/46 Test #37: MdrunTests ..........................   Passed    1.52 sec
2098
      Start 38: MdrunNonIntegratorTests
2099
38/46 Test #38: MdrunNonIntegratorTests .............   Passed    7.98 sec
2100
      Start 39: LegacyGroupSchemeMdrunTests
2101
39/46 Test #39: LegacyGroupSchemeMdrunTests .........   Passed    0.59 sec
2102
      Start 40: MdrunMpiTests
2103
40/46 Test #40: MdrunMpiTests .......................   Passed    1.20 sec
2104
      Start 41: regressiontests/simple
2105
41/46 Test #41: regressiontests/simple ..............   Passed    7.47 sec
2106
      Start 42: regressiontests/complex
2107
42/46 Test #42: regressiontests/complex .............   Passed   49.23 sec
2108
      Start 43: regressiontests/kernel
2109
43/46 Test #43: regressiontests/kernel ..............   Passed   87.76 sec
2110
      Start 44: regressiontests/freeenergy
2111
44/46 Test #44: regressiontests/freeenergy ..........   Passed   10.99 sec
2112
      Start 45: regressiontests/rotation
2113
45/46 Test #45: regressiontests/rotation ............   Passed    6.18 sec
2114
      Start 46: regressiontests/essentialdynamics
2115
46/46 Test #46: regressiontests/essentialdynamics ...   Passed    4.98 sec
2116

    
2117
100% tests passed, 0 tests failed out of 46
2118

    
2119
Label Time Summary:
2120
GTest              =  47.76 sec*proc (40 tests)
2121
IntegrationTest    =  11.32 sec*proc (5 tests)
2122
MpiTest            =   0.38 sec*proc (3 tests)
2123
SlowTest           =  31.54 sec*proc (1 test)
2124
UnitTest           =   4.89 sec*proc (34 tests)
2125

    
2126
Total Test time (real) = 214.41 sec
2127
[100%] Built target run-ctest-nophys
2128
[100%] Built target check