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CMakeError_cmake313.log

Stefano Guglielmo, 09/24/2019 05:25 PM

 
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Determining if the pthread_create exist failed with the following output:
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Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
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Run Build Command:"/usr/bin/make" "cmTC_9b7f2/fast"
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/usr/bin/make -f CMakeFiles/cmTC_9b7f2.dir/build.make CMakeFiles/cmTC_9b7f2.dir/build
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make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Building C object CMakeFiles/cmTC_9b7f2.dir/CheckSymbolExists.c.o
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/usr/bin/cc    -o CMakeFiles/cmTC_9b7f2.dir/CheckSymbolExists.c.o   -c /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c
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Linking C executable cmTC_9b7f2
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/home/stefano/cmake-3.13.5/bin/cmake -E cmake_link_script CMakeFiles/cmTC_9b7f2.dir/link.txt --verbose=1
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/usr/bin/cc      CMakeFiles/cmTC_9b7f2.dir/CheckSymbolExists.c.o  -o cmTC_9b7f2 
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CMakeFiles/cmTC_9b7f2.dir/CheckSymbolExists.c.o: In function `main':
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CheckSymbolExists.c:(.text+0x1b): undefined reference to `pthread_create'
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collect2: error: ld returned 1 exit status
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CMakeFiles/cmTC_9b7f2.dir/build.make:86: recipe for target 'cmTC_9b7f2' failed
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make[1]: *** [cmTC_9b7f2] Error 1
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make[1]: Leaving directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Makefile:121: recipe for target 'cmTC_9b7f2/fast' failed
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File /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
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/* */
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#include <pthread.h>
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int main(int argc, char** argv)
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{
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  (void)argv;
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#ifndef pthread_create
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  return ((int*)(&pthread_create))[argc];
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#else
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  (void)argc;
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  return 0;
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#endif
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}
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Determining if the function pthread_create exists in the pthreads failed with the following output:
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Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
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Run Build Command:"/usr/bin/make" "cmTC_b8cc8/fast"
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/usr/bin/make -f CMakeFiles/cmTC_b8cc8.dir/build.make CMakeFiles/cmTC_b8cc8.dir/build
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make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Building C object CMakeFiles/cmTC_b8cc8.dir/CheckFunctionExists.c.o
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/usr/bin/cc   -DCHECK_FUNCTION_EXISTS=pthread_create   -o CMakeFiles/cmTC_b8cc8.dir/CheckFunctionExists.c.o   -c /home/stefano/cmake-3.13.5/share/cmake-3.13/Modules/CheckFunctionExists.c
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Linking C executable cmTC_b8cc8
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/home/stefano/cmake-3.13.5/bin/cmake -E cmake_link_script CMakeFiles/cmTC_b8cc8.dir/link.txt --verbose=1
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/usr/bin/cc  -DCHECK_FUNCTION_EXISTS=pthread_create    CMakeFiles/cmTC_b8cc8.dir/CheckFunctionExists.c.o  -o cmTC_b8cc8 -lpthreads 
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/usr/bin/ld: cannot find -lpthreads
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collect2: error: ld returned 1 exit status
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CMakeFiles/cmTC_b8cc8.dir/build.make:86: recipe for target 'cmTC_b8cc8' failed
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make[1]: *** [cmTC_b8cc8] Error 1
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make[1]: Leaving directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Makefile:121: recipe for target 'cmTC_b8cc8/fast' failed
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make: *** [cmTC_b8cc8/fast] Error 2
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Determining if files io.h exist failed with the following output:
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Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
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Run Build Command:"/usr/bin/make" "cmTC_418f3/fast"
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/usr/bin/make -f CMakeFiles/cmTC_418f3.dir/build.make CMakeFiles/cmTC_418f3.dir/build
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make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Building C object CMakeFiles/cmTC_418f3.dir/HAVE_IO_H.c.o
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/usr/bin/cc    -o CMakeFiles/cmTC_418f3.dir/HAVE_IO_H.c.o   -c /home/stefano/gromacs-2019.3/build/CMakeFiles/CheckIncludeFiles/HAVE_IO_H.c
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CheckIncludeFiles/HAVE_IO_H.c:2:10: fatal error: io.h: No such file or directory
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 #include <io.h>
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          ^~~~~~
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compilation terminated.
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CMakeFiles/cmTC_418f3.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_418f3.dir/HAVE_IO_H.c.o' failed
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make[1]: *** [CMakeFiles/cmTC_418f3.dir/HAVE_IO_H.c.o] Error 1
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make[1]: Leaving directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Makefile:121: recipe for target 'cmTC_418f3/fast' failed
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Source:
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/* */
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#include <io.h>
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int main(void){return 0;}
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Determining if the _fileno exist failed with the following output:
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Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
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Run Build Command:"/usr/bin/make" "cmTC_b650e/fast"
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/usr/bin/make -f CMakeFiles/cmTC_b650e.dir/build.make CMakeFiles/cmTC_b650e.dir/build
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make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Building CXX object CMakeFiles/cmTC_b650e.dir/CheckSymbolExists.cxx.o
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/usr/bin/c++    -std=c++11      -o CMakeFiles/cmTC_b650e.dir/CheckSymbolExists.cxx.o -c /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: In function ‘int main(int, char**)’:
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:8:19: error: ‘_fileno’ was not declared in this scope
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   return ((int*)(&_fileno))[argc];
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                   ^~~~~~~
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:8:19: note: suggested alternative: ‘fileno’
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   return ((int*)(&_fileno))[argc];
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                   ^~~~~~~
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                   fileno
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CMakeFiles/cmTC_b650e.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_b650e.dir/CheckSymbolExists.cxx.o' failed
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make[1]: *** [CMakeFiles/cmTC_b650e.dir/CheckSymbolExists.cxx.o] Error 1
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make[1]: Leaving directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Makefile:121: recipe for target 'cmTC_b650e/fast' failed
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File /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:
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/* */
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#include <stdio.h>
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int main(int argc, char** argv)
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{
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#ifndef _fileno
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#else
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  return 0;
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#endif
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Determining if the _commit exist failed with the following output:
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Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
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Run Build Command:"/usr/bin/make" "cmTC_d25bc/fast"
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/usr/bin/make -f CMakeFiles/cmTC_d25bc.dir/build.make CMakeFiles/cmTC_d25bc.dir/build
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make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Building CXX object CMakeFiles/cmTC_d25bc.dir/CheckSymbolExists.cxx.o
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/usr/bin/c++    -std=c++11      -o CMakeFiles/cmTC_d25bc.dir/CheckSymbolExists.cxx.o -c /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:2:10: fatal error: io.h: No such file or directory
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 #include <io.h>
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          ^~~~~~
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compilation terminated.
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CMakeFiles/cmTC_d25bc.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_d25bc.dir/CheckSymbolExists.cxx.o' failed
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make[1]: *** [CMakeFiles/cmTC_d25bc.dir/CheckSymbolExists.cxx.o] Error 1
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File /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:
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/* */
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#ifndef _commit
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Determining if the memalign exist failed with the following output:
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Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
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Run Build Command:"/usr/bin/make" "cmTC_ba14a/fast"
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/usr/bin/make -f CMakeFiles/cmTC_ba14a.dir/build.make CMakeFiles/cmTC_ba14a.dir/build
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make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Building CXX object CMakeFiles/cmTC_ba14a.dir/CheckSymbolExists.cxx.o
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/usr/bin/c++    -std=c++11      -o CMakeFiles/cmTC_ba14a.dir/CheckSymbolExists.cxx.o -c /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: In function ‘int main(int, char**)’:
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:8:19: error: ‘memalign’ was not declared in this scope
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                   ^~~~~~~~
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:8:19: note: suggested alternative: ‘main’
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                   ^~~~~~~~
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                   main
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CMakeFiles/cmTC_ba14a.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_ba14a.dir/CheckSymbolExists.cxx.o' failed
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Makefile:121: recipe for target 'cmTC_ba14a/fast' failed
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File /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:
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/* */
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int main(int argc, char** argv)
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#ifndef memalign
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Performing C SOURCE FILE Test C_xCORE_AVX512_qopt_zmm_usage_high_FLAG_ACCEPTED failed with the following output:
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Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
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Run Build Command:"/usr/bin/make" "cmTC_65458/fast"
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Building C object CMakeFiles/cmTC_65458.dir/src.c.o
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cc: error: unrecognized command line option ‘-qopt-zmm-usage=high’
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CMakeFiles/cmTC_65458.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_65458.dir/src.c.o' failed
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Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
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Run Build Command:"/usr/bin/make" "cmTC_d5bbe/fast"
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cc: error: language CORE-AVX512 not recognized
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CMakeFiles/cmTC_d5bbe.dir/build.make:65: recipe for target 'CMakeFiles/cmTC_d5bbe.dir/src.c.o' failed
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Performing C++ SOURCE FILE Test CXX_xCORE_AVX512_qopt_zmm_usage_high_FLAG_ACCEPTED failed with the following output:
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Performing C++ SOURCE FILE Test CXX_xCORE_AVX512_FLAG_ACCEPTED failed with the following output:
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/src.c:3:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘f’
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/src.c: In function ‘main’:
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 int __vectorcall f(int i) {return i;} int main(void) {return f(0);}
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/src.c:3:15: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘f’
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 int __regcall f(int i) {return i;} int main(void) {return f(0);}
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               ^
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/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/src.c: In function ‘main’:
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 int __regcall f(int i) {return i;} int main(void) {return f(0);}
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                                                           ^
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