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CMakeOutput_cmake313.log

Stefano Guglielmo, 09/24/2019 05:25 PM

 
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The system is: Linux - 4.15.0-54-generic - x86_64
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Detecting CXX [-std=c++11] compiler features compiled with the following output:
491
Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
492

    
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Run Build Command:"/usr/bin/make" "cmTC_c902f/fast"
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/usr/bin/make -f CMakeFiles/cmTC_c902f.dir/build.make CMakeFiles/cmTC_c902f.dir/build
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make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Building CXX object CMakeFiles/cmTC_c902f.dir/feature_tests.cxx.o
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Linking CXX executable cmTC_c902f
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/home/stefano/cmake-3.13.5/bin/cmake -E cmake_link_script CMakeFiles/cmTC_c902f.dir/link.txt --verbose=1
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/usr/bin/c++       CMakeFiles/cmTC_c902f.dir/feature_tests.cxx.o  -o cmTC_c902f 
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560
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Detecting CXX [-std=c++98] compiler features compiled with the following output:
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Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
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Run Build Command:"/usr/bin/make" "cmTC_20d7a/fast"
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/usr/bin/make -f CMakeFiles/cmTC_20d7a.dir/build.make CMakeFiles/cmTC_20d7a.dir/build
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make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Building CXX object CMakeFiles/cmTC_20d7a.dir/feature_tests.cxx.o
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571
Linking CXX executable cmTC_20d7a
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580
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582
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585
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587
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588
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590
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591
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592
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593
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594
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595
    Feature record: CXX_FEATURE:0cxx_digit_separators
596
    Feature record: CXX_FEATURE:0cxx_enum_forward_declarations
597
    Feature record: CXX_FEATURE:0cxx_explicit_conversions
598
    Feature record: CXX_FEATURE:0cxx_extended_friend_declarations
599
    Feature record: CXX_FEATURE:0cxx_extern_templates
600
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601
    Feature record: CXX_FEATURE:0cxx_func_identifier
602
    Feature record: CXX_FEATURE:0cxx_generalized_initializers
603
    Feature record: CXX_FEATURE:0cxx_generic_lambdas
604
    Feature record: CXX_FEATURE:0cxx_inheriting_constructors
605
    Feature record: CXX_FEATURE:0cxx_inline_namespaces
606
    Feature record: CXX_FEATURE:0cxx_lambdas
607
    Feature record: CXX_FEATURE:0cxx_lambda_init_captures
608
    Feature record: CXX_FEATURE:0cxx_local_type_template_args
609
    Feature record: CXX_FEATURE:0cxx_long_long_type
610
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611
    Feature record: CXX_FEATURE:0cxx_nonstatic_member_init
612
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613
    Feature record: CXX_FEATURE:0cxx_override
614
    Feature record: CXX_FEATURE:0cxx_range_for
615
    Feature record: CXX_FEATURE:0cxx_raw_string_literals
616
    Feature record: CXX_FEATURE:0cxx_reference_qualified_functions
617
    Feature record: CXX_FEATURE:0cxx_relaxed_constexpr
618
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619
    Feature record: CXX_FEATURE:0cxx_right_angle_brackets
620
    Feature record: CXX_FEATURE:0cxx_rvalue_references
621
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622
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623
    Feature record: CXX_FEATURE:0cxx_strong_enums
624
    Feature record: CXX_FEATURE:1cxx_template_template_parameters
625
    Feature record: CXX_FEATURE:0cxx_thread_local
626
    Feature record: CXX_FEATURE:0cxx_trailing_return_types
627
    Feature record: CXX_FEATURE:0cxx_unicode_literals
628
    Feature record: CXX_FEATURE:0cxx_uniform_initialization
629
    Feature record: CXX_FEATURE:0cxx_unrestricted_unions
630
    Feature record: CXX_FEATURE:0cxx_user_literals
631
    Feature record: CXX_FEATURE:0cxx_variable_templates
632
    Feature record: CXX_FEATURE:0cxx_variadic_macros
633
    Feature record: CXX_FEATURE:0cxx_variadic_templates
634
Determining if the include file pthread.h exists passed with the following output:
635
Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
636

    
637
Run Build Command:"/usr/bin/make" "cmTC_39cd6/fast"
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/usr/bin/make -f CMakeFiles/cmTC_39cd6.dir/build.make CMakeFiles/cmTC_39cd6.dir/build
639
make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
640
Building C object CMakeFiles/cmTC_39cd6.dir/CheckIncludeFile.c.o
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/usr/bin/cc    -o CMakeFiles/cmTC_39cd6.dir/CheckIncludeFile.c.o   -c /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c
642
Linking C executable cmTC_39cd6
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/home/stefano/cmake-3.13.5/bin/cmake -E cmake_link_script CMakeFiles/cmTC_39cd6.dir/link.txt --verbose=1
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/usr/bin/cc      CMakeFiles/cmTC_39cd6.dir/CheckIncludeFile.c.o  -o cmTC_39cd6 
645
make[1]: Leaving directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Determining if the function pthread_create exists in the pthread passed with the following output:
649
Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
650

    
651
Run Build Command:"/usr/bin/make" "cmTC_912df/fast"
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/usr/bin/make -f CMakeFiles/cmTC_912df.dir/build.make CMakeFiles/cmTC_912df.dir/build
653
make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
654
Building C object CMakeFiles/cmTC_912df.dir/CheckFunctionExists.c.o
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/usr/bin/cc   -DCHECK_FUNCTION_EXISTS=pthread_create   -o CMakeFiles/cmTC_912df.dir/CheckFunctionExists.c.o   -c /home/stefano/cmake-3.13.5/share/cmake-3.13/Modules/CheckFunctionExists.c
656
Linking C executable cmTC_912df
657
/home/stefano/cmake-3.13.5/bin/cmake -E cmake_link_script CMakeFiles/cmTC_912df.dir/link.txt --verbose=1
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/usr/bin/cc  -DCHECK_FUNCTION_EXISTS=pthread_create    CMakeFiles/cmTC_912df.dir/CheckFunctionExists.c.o  -o cmTC_912df -lpthread 
659
make[1]: Leaving directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Performing C++ SOURCE FILE Test CXXFLAG_STD_CXX0X succeeded with the following output:
663
Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
664

    
665
Run Build Command:"/usr/bin/make" "cmTC_20098/fast"
666
/usr/bin/make -f CMakeFiles/cmTC_20098.dir/build.make CMakeFiles/cmTC_20098.dir/build
667
make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
668
Building CXX object CMakeFiles/cmTC_20098.dir/src.cxx.o
669
/usr/bin/c++    -DCXXFLAG_STD_CXX0X -std=c++11   -o CMakeFiles/cmTC_20098.dir/src.cxx.o -c /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/src.cxx
670
Linking CXX executable cmTC_20098
671
/home/stefano/cmake-3.13.5/bin/cmake -E cmake_link_script CMakeFiles/cmTC_20098.dir/link.txt --verbose=1
672
/usr/bin/c++   -DCXXFLAG_STD_CXX0X -std=c++11    CMakeFiles/cmTC_20098.dir/src.cxx.o  -o cmTC_20098 
673
make[1]: Leaving directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Source file was:
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int main() { return 0;}
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Performing C++ SOURCE FILE Test CXX11_SUPPORTED succeeded with the following output:
678
Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
679

    
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Run Build Command:"/usr/bin/make" "cmTC_f0d03/fast"
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/usr/bin/make -f CMakeFiles/cmTC_f0d03.dir/build.make CMakeFiles/cmTC_f0d03.dir/build
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make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Building CXX object CMakeFiles/cmTC_f0d03.dir/src.cxx.o
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/usr/bin/c++    -DCXX11_SUPPORTED -std=c++11   -o CMakeFiles/cmTC_f0d03.dir/src.cxx.o -c /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/src.cxx
685
Linking CXX executable cmTC_f0d03
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/home/stefano/cmake-3.13.5/bin/cmake -E cmake_link_script CMakeFiles/cmTC_f0d03.dir/link.txt --verbose=1
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/usr/bin/c++   -DCXX11_SUPPORTED -std=c++11    CMakeFiles/cmTC_f0d03.dir/src.cxx.o  -o cmTC_f0d03 
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make[1]: Leaving directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Source file was:
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// Permit testing typeid keyword
692
#include <typeinfo>
693
// Test that a subclass has a proper copy constructor
694
struct a {
695
  a() {};
696
  a(const a&) {};
697
  a(a&&) = delete;
698
};
699
class b: public a
700
{
701
};
702
b bTest() {
703
  return b();
704
}
705
// ICC requires that a suitable GCC is available. It is using its standard library and emulates
706
// GCC behaviour based on its version. Relevant here it emulates the implementation of the move
707
// constructor. This compiler check should only fail based on the compiler not GCC. The GCC version
708
// is checked by the following STL check. It is known that all ICC>=15 have the proper move
709
// constructor. Thus this check is disabled for ICC.
710
#if !(defined __INTEL_COMPILER || defined __ICL)
711
// Test that a subclass has a proper move constructor
712
struct c {
713
  c() {};
714
  c(const c&) = delete;
715
  c(c&&) {};
716
};
717
struct d : public c {
718
};
719
d dTest() {
720
  return d();
721
}
722
#endif
723
struct e {
724
  // Test that operator bool() works
725
  explicit operator bool() {return true;}
726
  // Test that an in-class initializer works
727
  int x = 1;
728
  // Test that a default constructor is generated
729
  e() = default;
730
};
731
// Test that constexpr works
732
constexpr int factorial(int n)
733
{
734
    return n <= 1? 1 : (n * factorial(n - 1));
735
}
736
// Test that r-value references work
737
void checkRvalueReference(int &&);
738
// Test that extern templates work
739
template <typename T> void someFunction();
740
extern template void someFunction<int>();
741
// Test using statement
742
using myInt = int;
743
// Test template using statement
744
template<class T> using myPointer = T*;
745
myPointer<int> x;
746
// Test in-class array initalizers used with constructor initializer lists
747
struct TestStruct
748
{
749
    float a[3][3] = {{0}}; // in-class initializer
750
    float b; // not initialized until constructor initializer list
751
    TestStruct();
752
};
753
TestStruct::TestStruct() : b(0) {}
754
int main() {
755
  // Test nullptr
756
  double *x = nullptr;
757
  (void)x; // Suppressing unused variable warning
758
  // Test range-based for loops
759
  int array[5] = { 1, 2, 3, 4, 5 };
760
  for (int& x : array)
761
    x *= 2;
762
  // Test alignas
763
  alignas(4*sizeof(int)) int y;
764
  // Test typeid
765
  const std::type_info &intType = typeid(int);
766
  // Test static assertions do compile
767
  static_assert(true, "if you see this, true somehow isn't");
768
  // Test a lambda
769
  [=]{};
770
}
771
Performing C++ SOURCE FILE Test CXX11_STDLIB_PRESENT succeeded with the following output:
772
Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
773

    
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Run Build Command:"/usr/bin/make" "cmTC_37c06/fast"
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/usr/bin/make -f CMakeFiles/cmTC_37c06.dir/build.make CMakeFiles/cmTC_37c06.dir/build
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make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
777
Building CXX object CMakeFiles/cmTC_37c06.dir/src.cxx.o
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/usr/bin/c++    -DCXX11_STDLIB_PRESENT -std=c++11   -o CMakeFiles/cmTC_37c06.dir/src.cxx.o -c /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/src.cxx
779
Linking CXX executable cmTC_37c06
780
/home/stefano/cmake-3.13.5/bin/cmake -E cmake_link_script CMakeFiles/cmTC_37c06.dir/link.txt --verbose=1
781
/usr/bin/c++   -DCXX11_STDLIB_PRESENT -std=c++11    CMakeFiles/cmTC_37c06.dir/src.cxx.o  -o cmTC_37c06 -lpthread 
782
make[1]: Leaving directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Source file was:
785
#include <algorithm>
786
#include <array>
787
#include <chrono>
788
#include <iterator>
789
#include <map>
790
#include <memory>
791
#include <thread>
792
#include <type_traits>
793
#include <tuple>
794
#include <utility>
795
#include <string>
796
#include <vector>
797
int main() {
798
  // Test for std::vector
799
  std::vector<double> doubles(100);
800
  // Test for std::array
801
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802
  // Test std::for_each and a lambda
803
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804
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805
  typedef std::unique_ptr<int> intPointer;
806
  // Test using std::unique_ptr
807
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808
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1426
#ifndef gettimeofday
1427
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1428
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1430
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1431
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Building CXX object CMakeFiles/cmTC_b9162.dir/CheckSymbolExists.cxx.o
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1454
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1455
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1456
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1457
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1459
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1481
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1482
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1483
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1484
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1485
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1486
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1487
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1488
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1509
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1510
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1511
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1512
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1513
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1514
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1515
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Building CXX object CMakeFiles/cmTC_cb5ee.dir/CheckSymbolExists.cxx.o
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1539
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1540
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1541
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1542
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1543
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1544
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1564
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1565
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1566
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1567
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1568
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1570
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1571
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1572
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Building C object CMakeFiles/cmTC_3cd36.dir/CheckFunctionExists.c.o
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1652
Building C object CMakeFiles/cmTC_183ff.dir/src.c.o
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1660
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1661
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1662
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1663
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1664
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1665
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1666
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1667
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1670
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1673
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1676
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1734
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1737
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1738
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1739
#ifndef posix_memalign
1740
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1741
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1742
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1743
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1744
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1821
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const cmakeint16 info_little[] =  {0x4854, 0x5349, 0x4920, 0x2053, 0x494c, 0x5454, 0x454c, 0x4520, 0x444e, 0x4149, 0x2e4e, 0x0000};
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1825
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1826
const cmakeint16 info_big[] =     {0x5448, 0x4953, 0x2049, 0x5320, 0x4249, 0x4720, 0x454e, 0x4449, 0x414e, 0x2e2e, 0x0000};
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1829
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1830
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1831
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1832
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1833
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1834
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1835
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1836
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1837
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1838
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1839
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1880
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1883
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1884
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Building CXX object CMakeFiles/cmTC_8ab60.dir/src.cxx.o
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Source file was:
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#include<immintrin.h>
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         int main(){__m512 x=_mm512_set1_ps(0.5); __m512 y=_mm512_fmadd_ps(x,x,x);
1992
          __m512i i = _mm512_set_epi32(15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1, 0);
1993
          __mmask16 mask = (short)(0xffff);
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          int idata[16]; i  = _mm512_maskz_permutexvar_epi32(mask, i, i);
1995
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          return idata[0]*(int)(_mm512_cmp_ps_mask(x,y,_CMP_LT_OS));}
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Performing C++ SOURCE FILE Test CXX_mavx512f_mfma_FLAG_ACCEPTED succeeded with the following output:
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Building CXX object CMakeFiles/cmTC_4b0d1.dir/src.cxx.o
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Source file was:
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#include<immintrin.h>
2027
         int main(){__m512 x=_mm512_set1_ps(0.5); __m512 y=_mm512_fmadd_ps(x,x,x);
2028
          __m512i i = _mm512_set_epi32(15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1, 0);
2029
          __mmask16 mask = (short)(0xffff);
2030
          int idata[16]; i  = _mm512_maskz_permutexvar_epi32(mask, i, i);
2031
          _mm512_storeu_si512(idata, i);
2032
          return idata[0]*(int)(_mm512_cmp_ps_mask(x,y,_CMP_LT_OS));}
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Performing C++ SOURCE FILE Test _Wno_unused_command_line_argument_FLAG_ACCEPTED succeeded with the following output:
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Source file was:
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Performing C SOURCE FILE Test _callconv_  succeeded with the following output:
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Building C object CMakeFiles/cmTC_3f3b8.dir/src.c.o
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Linking C executable cmTC_3f3b8
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Source file was:
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#pragma GCC diagnostic error "-Wignored-attributes"
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Performing C SOURCE FILE Test HAVE_DLOPEN succeeded with the following output:
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Change Dir: /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp
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make[1]: Entering directory '/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp'
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Building C object CMakeFiles/cmTC_a9d62.dir/src.c.o
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/usr/bin/cc  -I/home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/dlfcn.h  -DHAVE_DLOPEN   -o CMakeFiles/cmTC_a9d62.dir/src.c.o   -c /home/stefano/gromacs-2019.3/build/CMakeFiles/CMakeTmp/src.c
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Linking C executable cmTC_a9d62
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Source file was:
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2083
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Performing C++ SOURCE FILE Test HAS_NO_UNUSED_VARIABLE succeeded with the following output:
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Building CXX object CMakeFiles/cmTC_f6b21.dir/src.cxx.o
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Performing C++ SOURCE FILE Test HAS_NO_UNUSED succeeded with the following output:
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Building CXX object CMakeFiles/cmTC_094b4.dir/src.cxx.o
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Source file was:
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Performing C++ SOURCE FILE Test HAS_NO_MISSING_DECL succeeded with the following output:
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Building CXX object CMakeFiles/cmTC_7dc0d.dir/src.cxx.o
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Building C object CMakeFiles/cmTC_acbd6.dir/TestEndianess.c.o
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/* On a little endian machine, these 16bit ints will give "THIS IS LITTLE ENDIAN."
2148
   On a big endian machine the characters will be exchanged pairwise. */
2149
const cmakeint16 info_little[] =  {0x4854, 0x5349, 0x4920, 0x2053, 0x494c, 0x5454, 0x454c, 0x4520, 0x444e, 0x4149, 0x2e4e, 0x0000};
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/* on a big endian machine, these 16bit ints will give "THIS IS BIG ENDIAN."
2152
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const cmakeint16 info_big[] =     {0x5448, 0x4953, 0x2049, 0x5320, 0x4249, 0x4720, 0x454e, 0x4449, 0x414e, 0x2e2e, 0x0000};
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2157
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2158
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2159
#endif
2160
{
2161
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2162
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2163
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2164
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2165
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2166
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Determining if the include file inttypes.h exists passed with the following output:
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Building C object CMakeFiles/cmTC_084e0.dir/CheckIncludeFile.c.o
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