Mock Version: 1.4.13 Mock Version: 1.4.13 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target s390x --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f30-build-15054824-1073698/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target s390x --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: s390x Building for target s390x Wrote: /builddir/build/SRPMS/gromacs-2019-1.fc30.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target s390x --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f30-build-15054824-1073698/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target s390x --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: s390x Building for target s390x Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.JFThZj + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf gromacs-2019 + /usr/bin/gzip -dc /builddir/build/SOURCES/gromacs-2019.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2019 + /usr/bin/gzip -dc /builddir/build/SOURCES/regressiontests-2019.tar.gz + /usr/bin/tar -xof - Patch #0 (gromacs-dssp-path.patch): patching file src/gromacs/gmxana/gmx_do_dssp.cpp Hunk #1 succeeded at 501 (offset 56 lines). Hunk #2 succeeded at 640 (offset 50 lines). Patch #2 (dd43a2b.diff): patching file src/gromacs/gpu_utils/gpu_utils_ocl.cpp + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (gromacs-dssp-path.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 + echo 'Patch #2 (dd43a2b.diff):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 + install -Dpm644 /builddir/build/SOURCES/manual-2019.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/fftpack src/external/tng_io src/external/lmfit + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.mvH4ML + umask 022 + cd /builddir/build/BUILD + cd gromacs-2019 + . /etc/profile.d/modules.sh BUILDSTDERR: ++ '[' -z '' ']' BUILDSTDERR: ++ '[' -z /usr/share/modulefiles ']' BUILDSTDERR: ++ PS_CMD=/usr/bin/ps BUILDSTDERR: ++ '[' '!' -x /usr/bin/ps ']' BUILDSTDERR: ++ EXPR_CMD=/usr/bin/expr BUILDSTDERR: ++ '[' '!' -x /usr/bin/expr ']' BUILDSTDERR: ++ BASENAME_CMD=/usr/bin/basename BUILDSTDERR: ++ '[' '!' -x /usr/bin/basename ']' BUILDSTDERR: +++ /usr/bin/ps -p 27117 -ocomm= BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/expr sh : '-*\(.*\)' BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/basename sh BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: ++ '[' -f /usr/share/lmod/lmod/init/sh ']' BUILDSTDERR: ++ . /usr/share/lmod/lmod/init/sh BUILDSTDERR: +++ LMOD_PKG=/usr/share/lmod/lmod BUILDSTDERR: +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ BUILDSTDERR: +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod BUILDSTDERR: +++ MODULESHOME=/usr/share/lmod/lmod BUILDSTDERR: +++ export LMOD_CMD BUILDSTDERR: +++ export LMOD_PKG BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: +++ export MODULESHOME BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial + pushd serial ~/build/BUILD/gromacs-2019/serial ~/build/BUILD/gromacs-2019 + test -z '' + cp -al ../regressiontests-2019 tests/ + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS BUILDSTDERR: ++ test -n '' BUILDSTDERR: ++ echo -DGMX_X11=ON BUILDSTDERR: ++ test -n '' BUILDSTDERR: ++ echo -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_X11=ON -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON .. -- The C compiler identification is GNU 9.0.1 -- The CXX compiler identification is GNU 9.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "2.2") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- hwloc version: 1.11.9 -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "1.11.9", minimum required is "1.5") -- Looking for XOpenDisplay in /usr/lib64/libX11.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/lib64/libX11.so -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - IBM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "" -- Using default library suffix: "" -- Could not convert sample image, ImageMagick convert can not be used -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Can not build documentation with Python 3 -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "1.5.4") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found lmfit: /usr/include (found version "8.2") -- Configuring done -- Generating done BUILDSTDERR: CMake Warning: BUILDSTDERR: Manually-specified variables were not used by the project: BUILDSTDERR: CMAKE_Fortran_FLAGS_RELEASE BUILDSTDERR: GMX_EXTERNAL_LMFIT BUILDSTDERR: INCLUDE_INSTALL_DIR BUILDSTDERR: LIB_INSTALL_DIR BUILDSTDERR: LIB_SUFFIX BUILDSTDERR: SHARE_INSTALL_PREFIX BUILDSTDERR: SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019/serial + /usr/bin/make -O -j2 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= Scanning dependencies of target clFFT make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/accessors.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/action.transpose.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/enqueue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/fft_binary_lookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/generator.copy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/generator.stockham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/generator.transpose.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/generator.transpose.gcn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 11%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building C object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.c.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/md5sum.c.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/md5sum.c make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/plan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/repo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library/transform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/clFFT/src/statTimer/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Built target clFFT make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp BUILDSTDERR: In file included from /usr/include/string.h:494, BUILDSTDERR: from /usr/include/c++/9/cstring:42, BUILDSTDERR: from /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:41: BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'char* strncpy(char*, const char*, size_t)', BUILDSTDERR: inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:1make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' BUILDSTDERR: 06:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/alltoall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/p2p_protocol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/barrier.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/p2p_send_recv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/bcast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/p2p_wait.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/collective.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/profile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/comm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/reduce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/event.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/reduce_fast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/scatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/tmpi_init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/list.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/scan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/numa_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/once.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs /builddir/build/BUILD/gromacs-2019/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target view_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/3dview.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/3dview.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/buttons.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/buttons.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/dialogs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/dialogs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/fgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/fgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/filter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/logo.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/logo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/molps.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/molps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nleg.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/nleg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nmol.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/nmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/popup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/popup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/pulldown.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/pulldown.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/view.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/view.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/x11.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/x11.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xdlg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xdlghi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xdlgitem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs /builddir/build/BUILD/gromacs-2019/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xmb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xmb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Built target view_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_test_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019/serial/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.2424363 -P /builddir/build/BUILD/gromacs-2019/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 23%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/energyreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/energycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/moduletest.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/simulationdatabase.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/terminationhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/trajectorycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/trajectoryreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src 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'/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && 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CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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'/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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'/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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'/builddir/build/BUILD/gromacs-2019/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/binsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/cmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/dens_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/eigio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/dlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/fitahx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_anadock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_analyze.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include 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src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_bundle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_chi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_clustsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_confrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_density.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_current.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_densmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_densorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dielectric.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dipoles.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dos.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_do_dssp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dyndom.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_eneconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_editconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_enemat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_genpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_helix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_helixorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_hydorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_lie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_make_edi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_mdmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_make_ndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_mk_angndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_mindist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_morph.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_msd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmens.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmtraj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_pme_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_polystat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_potential.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_principal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rmsdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rmsf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rotacf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rotmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_saltbr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_saxs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_sigeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_sorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_sham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_spatial.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_spol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_tcaf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_traj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_trjcat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_trjorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_trjconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_vanhove.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_tune_pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_velacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_wheel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_xpm2ps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/hxprops.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_wham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/nrama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/powerspect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/nsfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/princ.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/pp2shift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/thermochemistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/sfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/add_par.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/calch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/convparm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/fflibutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gen_ad.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/genconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/genhydro.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gen_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gpp_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gpp_nextnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gmxcpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/h_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/hizzie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/grompp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/insert-molecules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/nm2type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/pdb2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/pgutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/pdb2gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/readpull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/readrot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/resall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/solvate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/specbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/readir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/ter_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tomorse.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/topdirs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/topio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/toppush.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/topshake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/toputil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/x2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/xlate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/vsite_parm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/crosscorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/autocorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/gmx_lmcurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/expfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/statistics/statistics.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/datamodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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'/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/average.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/datastorage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/displacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/histogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_keywords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_merge.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_permute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src 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'/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/symrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/analysissettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/analysismodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/freevolume.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/pairdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/rdf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/sasa.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/select.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/trajectory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/runnercommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/check.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tools/report-methods.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/report-methods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src 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'/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c 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-fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && 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'/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_