Task #1805
Difficult to find gmx select documentation
Description
I find it difficult to find the gmx select syntax. I end up googling it and wind up here: http://www.gromacs.org/Documentation/Gromacs_Utilities/g_select where I read that
g_select -select 'help all'
should give me the docs. On my (master-based) gmx doing
gmx select -select 'help all'
gives a syntax error.
To get to the docs I need a tpr and do 'gmx select -s topol.tpr' and then 'help' and then e.g.'help syntax'. It would be much better if 1) I get info about how to reach the docs directly from 'gmx select -h' and 2) if I can go through the docs without providing any input.
Associated revisions
Make it easier to find selection help
Now the command-line reference part of the user guide has a TOC entry
that has the magic work "selection" in it.
Fixes #1805
Change-Id: Ib99840ab1f3fd72a52f28ffa1e06ee1242fa4310
History
#1 Updated by Justin Lemkul almost 5 years ago
The "problem" (if it can be called that) is that the selection mechanism is gradually being introduced into multiple tools; the help info is no longer unique to gmx select, which in old versions as g_select, was the only tool that used the selection syntax. Now, others (e.g. gmx distance) use it, too. So what you want is
gmx help selections
which can then be used to find syntax, examples, etc. Much of the information on the wiki is getting outdated, and I haven't had time to keep up with that as I once did, but of course others can add to it with new information that they learn :)
#2 Updated by Mark Abraham almost 5 years ago
gmx help selections is the new magic thing. Let me see if I can make this easier in both 5.0 and 5.1 branches
#3 Updated by Gerrit Code Review Bot almost 5 years ago
Gerrit received a related patchset '1' for Issue #1805.
Uploader: Mark Abraham (mark.j.abraham@gmail.com)
Change-Id: Ie09baa75601f6ba3e8e514f78e3bae34e7327f86
Gerrit URL: https://gerrit.gromacs.org/4990
#4 Updated by Gerrit Code Review Bot almost 5 years ago
Gerrit received a related patchset '1' for Issue #1805.
Uploader: Mark Abraham (mark.j.abraham@gmail.com)
Change-Id: Ib99840ab1f3fd72a52f28ffa1e06ee1242fa4310
Gerrit URL: https://gerrit.gromacs.org/4991
#5 Updated by Teemu Murtola almost 5 years ago
Note that in 5.1, you can just read all the information that is available in the selection help directly from the user guide.
#6 Updated by Mark Abraham almost 5 years ago
Teemu Murtola wrote:
Note that in 5.1, you can just read all the information that is available in the selection help directly from the user guide.
Indeed, although 4991 makes it easier to find it in the TOC
#7 Updated by Mark Abraham almost 5 years ago
- Status changed from New to Resolved
- % Done changed from 0 to 100
Applied in changeset b80193784dd4ac929f18c30031a91141e650baa9.
#8 Updated by Teemu Murtola over 4 years ago
- Status changed from Resolved to Closed
- Target version set to 5.1.2
Make it easier to find selection help
Fixes #1805
Change-Id: Ie09baa75601f6ba3e8e514f78e3bae34e7327f86