GROMACS

Users could benefit from an up to date detailed walkthrough of the contents of a log file, including how to interpret build information, hardware detection, domain decomposition, and performance/scaling information. A good chunk of that information can be found at the bottom of this page:

http://www.gromacs.org/Documentation/Tutorials/GROMACS_USA_Workshop_and_Conference_2013/Topology_preparation%2C_%22What's_in_a_log_file%22%2C_basic_performance_improvements%3A_Mark_Abraham%2C_Session_1A

That information needs to be updated and expanded, particularly regarding GPUs.