Bug #2947
mdrun segfaults when trying to use membed
Description
When using the membed functionality in mdrun, a segfault occurs after selecting the relevant groups.
The issue seems to be present since at least the original 2019 release and is still present at release-2019^HEAD.
Commands to reproduce
gmx mdrun -nt 1 -s gmembed.tpr -membed gmembed.dat -c pi_pH70_popc_further_solvate.pdb -mn index_before_gmembed.ndx -v select group 1 for protein select group 13 for POPC
History
#1 Updated by Paul Bauer 12 days ago
- File gmembed.tpr gmembed.tpr added
- File index_before_gmembed.ndx index_before_gmembed.ndx added
#2 Updated by Paul Bauer 12 days ago
- Affected version - extra info changed from is present since 2018 to is present since 2019
Bisect shows that the bug got introduced in 8dd3c9ae88004054b3b112c23f747d27a19d8d29
#3 Updated by Paul Bauer 12 days ago
- File gmembed.dat gmembed.dat added
#4 Updated by Joe Jordan 12 days ago
Is there a plan to introduce an integration test on membed once the bug is fixed?
#5 Updated by Paul Bauer 12 days ago
I think there should be one :)
This hid actually another bug introduced in d4f85b613049e141c44f505b49e28e8b706b76ae
#6 Updated by Paul Bauer 11 days ago
There is still another bug further on in the tree :(
#7 Updated by Paul Bauer 11 days ago
it seems like the next bug was introduced in the merge fb755982116311bee2d1f9770678d221112e1ddb
#8 Updated by Mark Abraham 11 days ago
pro tip, write commit:2w3scxc9 and you get a link to the git repo behind redmine
#9 Updated by Paul Bauer 1 day ago
- Status changed from New to Fix uploaded