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Bug #2951

Core dump with gmx rdf with some selections

Added by Dallas Warren 8 days ago. Updated 7 days ago.

Status:
Fix uploaded
Priority:
Normal
Assignee:
-
Category:
analysis tools
Target version:
Affected version - extra info:
2016.3 issue doesn't occur
Affected version:
Difficulty:
uncategorized
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Description

When running some selections with gmx rdf 2019.2 get:
'Segmentation fault (core dumped)'

Exact same files and command, but using 2016.3 the program executes fine.

'gmx rdf -f md_001_short.xtc -s md_001.tpr -bin 0.01 -n index.ndx -seltype part_res_com -selrpos part_res_com -o '
Select 11 and 11

'gmx rdf -f md_001_short.xtc -s md_001.tpr -bin 0.01 -n index.ndx -seltype dyn_res_com -selrpos dyn_res_com -o '
Select 11 and 11

This one works fine with 2019.2:
'gmx rdf -f md_001_short.xtc -s md_001.tpr -bin 0.01 -n index.ndx -seltype whole_res_com -selrpos whole_res_com -o '

md_001.tpr (3.93 MB) md_001.tpr Dallas Warren, 05/14/2019 02:31 AM
md_001_short.xtc (25.3 MB) md_001_short.xtc Dallas Warren, 05/14/2019 02:31 AM
index.ndx (3.91 MB) index.ndx Dallas Warren, 05/14/2019 02:31 AM

History

#1 Updated by Paul Bauer 7 days ago

  • Status changed from New to Accepted

I reproduced this.
The bug got introduced in b2b1088c3726cea7a5e696e11c81dfab8f82fe8d

#2 Updated by Paul Bauer 7 days ago

  • Status changed from Accepted to Fix uploaded

#3 Updated by Paul Bauer 7 days ago

  • Target version set to 2019.3

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