Project

General

Profile

Bug #3055

Error in gmx xpm2ps

Added by Budheswar Dehury about 1 month ago. Updated about 1 month ago.

Status:
Feedback wanted
Priority:
Normal
Assignee:
-
Category:
-
Target version:
-
Affected version - extra info:
Affected version:
Difficulty:
uncategorized
Close

Description

gmx xpm2ps f dm.xpm -f2 dm.xpm -do dm.m2p -o plot.eps -size 1000
:
) GROMACS - gmx xpm2ps, 2019.2 (-:

GROMACS is written by:
Emile Apol Rossen Apostolov Paul Bauer Herman J.C. Berendsen
Par Bjelkmar Christian Blau Viacheslav Bolnykh Kevin Boyd
Aldert van Buuren Rudi van Drunen Anton Feenstra Alan Gray
Gerrit Groenhof Anca Hamuraru Vincent Hindriksen M. Eric Irrgang
Aleksei Iupinov Christoph Junghans Joe Jordan Dimitrios Karkoulis
Peter Kasson Jiri Kraus Carsten Kutzner Per Larsson
Justin A. Lemkul Viveca Lindahl Magnus Lundborg Erik Marklund
Pascal Merz Pieter Meulenhoff Teemu Murtola Szilard Pall
Sander Pronk Roland Schulz Michael Shirts Alexey Shvetsov
Alfons Sijbers Peter Tieleman Jon Vincent Teemu Virolainen
Christian Wennberg Maarten Wolf
and the project leaders:
Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel

Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2018, The GROMACS development team at
Uppsala University, Stockholm University and
the Royal Institute of Technology, Sweden.
check out http://www.gromacs.org for more information.

GROMACS is free software; you can redistribute it and/or modify it
under the terms of the GNU Lesser General Public License
as published by the Free Software Foundation; either version 2.1
of the License, or (at your option) any later version.

GROMACS: gmx xpm2ps, version 2019.2
Executable: /usr/local/gromacs/bin/gmx
Data prefix: /usr/local/gromacs
Working dir: /home/bd422/Desktop/BD/MD_Traj/APH1
Command line:
gmx xpm2ps -f dm.xpm -f2 dm.xpm -do dm.m2p -o plot.eps -size 1000

There is 1 matrix in dm.xpm
There is 1 matrix in dm.xpm
Matrix 0 is 257 x 257

-------------------------------------------------------
Program: gmx xpm2ps, version 2019.2

Standard library logic error (bug):
(exception type: St11logic_error)
basic_string::_M_construct null not valid

For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors

num.xvg (12 KB) num.xvg Budheswar Dehury, 08/09/2019 03:58 PM
dm.xpm (68.9 KB) dm.xpm Budheswar Dehury, 08/09/2019 03:58 PM

History

#1 Updated by Paul Bauer about 1 month ago

  • Status changed from New to Feedback wanted

this is indeed an issue in 2019 up till 2019.3, but is already fixed (as far as I can see) in the development for 2019.4

Also available in: Atom PDF