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Bug #530

git master compile broken (but release-4-5-patches works)

Added by Peter Kasson about 9 years ago. Updated about 9 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Erik Lindahl
Category:
mdrun
Target version:
Affected version - extra info:
Affected version:
Difficulty:
uncategorized
Close

Description

This should be assigned to Maarten Woolf, but I can't find a bugzilla account for him...

Errors in membed prevent mdrun (and g_membed) from compiling.
First encountered in OS/X 10.6; verified on Linux in fresh checkout, CMake build.

Suspect following commits that were to master but not release-4-5-patches:
commit 21a849949cfda389f5fa19d20c10862b58b829d2
Author: Maarten Wolf <>
Date: Fri Aug 27 15:16:38 2010 +0200

Moved g_membed functionality to mdrun

commit 429bf8a35871074f969f3e938a218f902781cd05
Merge: 4518165 860cdb5
Author: Maarten Wolf <>
Date: Fri Aug 27 15:09:42 2010 +0200

Merge branch 'master' of :gromacs
Conflicts:
src/kernel/md_openmm.c
src/tools/gmx_membed.c

commit 45181651ad54d66f55ed13ca0d7bacd42c89fd24
Author: Maarten Wolf <>
Date: Fri Aug 27 14:40:26 2010 +0200

Moved membed functionality to mdrun

Error messages as follows:
CMakeFiles/mdrun.dir/runner.c.o: In function `mdrunner':
runner.c:(.text+0x12fc): undefined reference to `init_membed'
CMakeFiles/mdrun.dir/md.c.o: In function `do_md':
md.c:(.text+0x3f86): undefined reference to `rescale_membed'
collect2: ld returned 1 exit status
make2: * [src/kernel/mdrun] Error 1
make1:
[src/kernel/CMakeFiles/mdrun.dir/all] Error 2
make1: *
* Waiting for unfinished jobs....

...

Building C object src/tools/CMakeFiles/gmxana.dir/gmx_membed.c.o
/data0/FAHdev/gmx/src/tools/gmx_membed.c: In function 'search_string':
/data0/FAHdev/gmx/src/tools/gmx_membed.c:122: warning: implicit declaration of function 'gmx_strcasecmp'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: In function 'get_tpr_version':
/data0/FAHdev/gmx/src/tools/gmx_membed.c:178: warning: implicit declaration of function 'open_tpx'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:178: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:201: warning: implicit declaration of function 'close_tpx'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: In function 'get_mtype_list':
/data0/FAHdev/gmx/src/tools/gmx_membed.c:230: warning: implicit declaration of function 'snew'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:247: warning: implicit declaration of function 'srenew'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: In function 'check_types':
/data0/FAHdev/gmx/src/tools/gmx_membed.c:275: warning: implicit declaration of function 'sfree'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: In function 'gen_rm_list':
/data0/FAHdev/gmx/src/tools/gmx_membed.c:545: warning: implicit declaration of function 'pbc_dx'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: In function 'top_update':
/data0/FAHdev/gmx/src/tools/gmx_membed.c:859: warning: implicit declaration of function 'ltrim'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:866: warning: implicit declaration of function 'rtrim'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: At top level:
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1095: error: expected declaration specifiers or '...' before 'gmx_global_stat_t'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1098: error: expected declaration specifiers or '...' before 't_vcm'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: In function 'compute_globals':
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1114: error: 'CGLO_RERUNMD' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1114: error: (Each undeclared identifier is reported only once
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1114: error: for each function it appears in.)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1115: error: 'CGLO_STOPCM' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1116: error: 'CGLO_GSTAT' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1117: error: 'CGLO_READEKIN' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1118: error: 'CGLO_SCALEEKIN' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1119: error: 'CGLO_ENERGY' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1120: error: 'CGLO_TEMPERATURE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1121: error: 'CGLO_PRESSURE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1122: error: 'CGLO_CONSTRAINT' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1123: error: 'CGLO_ITERATE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1124: error: 'CGLO_FIRSTITERATE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1143: warning: implicit declaration of function 'accumulate_u'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1148: warning: implicit declaration of function 'restore_ekinstate_from_state'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1153: warning: implicit declaration of function 'calc_ke_part'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1161: warning: implicit declaration of function 'calc_vcm_grp'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1162: error: 'vcm' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1187: warning: implicit declaration of function 'wallcycle_start'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1187: error: 'ewcMoveE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1189: warning: implicit declaration of function 'global_stat'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1189: error: 'gstat' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1195: warning: implicit declaration of function 'wallcycle_stop'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1234: warning: implicit declaration of function 'correct_ekin'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1244: warning: implicit declaration of function 'check_cm_grp'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1245: warning: implicit declaration of function 'do_stopcm_grp'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1247: warning: implicit declaration of function 'inc_nrnb'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1262: warning: implicit declaration of function 'sum_ekin'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1272: warning: implicit declaration of function 'calc_dispcorr'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1296: warning: implicit declaration of function 'calc_pres'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1310: warning: implicit declaration of function 'calc_temp'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: At top level:
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1534: error: expected declaration specifiers or '...' before 'gmx_runtime_t'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: In function 'reset_all_counters':
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1543: error: 'ewcRUN' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1544: warning: implicit declaration of function 'wallcycle_reset_all'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1547: warning: implicit declaration of function 'reset_dd_statistics_counters'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1549: warning: implicit declaration of function 'init_nrnb'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1554: warning: implicit declaration of function 'runtime_start'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1554: error: 'runtime' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1555: warning: implicit declaration of function 'print_date_and_time'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: In function 'check_ir_old_tpx_versions':
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1636: warning: implicit declaration of function 'gmx_mtop_ftype_count'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: At top level:
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1769: error: expected declaration specifiers or '...' before 'gmx_vsite_t'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1781: error: expected declaration specifiers or '...' before 'gmx_runtime_t'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: In function 'do_md_membed':
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1785: error: 'gmx_mdoutf_t' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1785: error: 'outf' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1803: error: 't_vcm' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1803: error: 'vcm' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1812: error: 't_mdebin' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1812: error: 'mdebin' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1819: error: 'gmx_global_stat_t' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1819: error: expected ';' before 'gstat'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1820: error: 'gmx_update_t' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1820: error: expected ';' before 'upd'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1848: error: 'gmx_stop_cond_none' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1856: error: 'MD_RERUN' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1857: error: 'MD_IONIZE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1858: error: 'MD_FFSCAN' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1859: error: 'MD_APPENDFILES' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1861: error: 'MD_RESETCOUNTERSHALFWAY' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1866: warning: implicit declaration of function 'wcycle_set_reset_counters'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1920: warning: implicit declaration of function 'init_md'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1921: error: 'upd' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1929: warning: implicit declaration of function 'init_enerdata'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1941: warning: implicit declaration of function 'init_ekindata'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1948: error: 'gstat' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1948: warning: implicit declaration of function 'global_stat_init'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1952: warning: implicit declaration of function 'init_shell_flexcon'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1953: warning: implicit declaration of function 'n_flexible_constraints'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1956: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1980: warning: implicit declaration of function 'dd_init_local_top'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1980: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1983: warning: implicit declaration of function 'dd_init_local_state'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1991: warning: implicit declaration of function 'split_system'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1991: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1993: warning: implicit declaration of function 'pd_cg_range'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1994: warning: implicit declaration of function 'pd_at_range'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1996: warning: implicit declaration of function 'gmx_mtop_generate_local_top'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:1996: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2002: warning: implicit declaration of function 'partdec_init_local_state'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2002: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2005: warning: implicit declaration of function 'atoms2md'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2007: error: 'vsite' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2008: warning: implicit declaration of function 'set_vsite_top'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2012: warning: implicit declaration of function 'mk_graph'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2012: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2016: warning: implicit declaration of function 'make_local_shells'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2027: warning: implicit declaration of function 'dd_partition_system'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2034: warning: implicit declaration of function 'update_mdatoms'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2041: warning: implicit declaration of function 'restore_energyhistory_from_state'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2044: warning: implicit declaration of function 'update_energyhistory'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2047: error: 'MD_READ_RNG' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2049: warning: implicit declaration of function 'set_stochd_state'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2055: warning: implicit declaration of function 'set_constraints'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2095: warning: implicit declaration of function 'do_constrain_first'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2101: warning: implicit declaration of function 'construct_vsites'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2110: error: 'CGLO_TEMPERATURE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2110: error: 'CGLO_GSTAT' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2111: error: 'CGLO_PRESSURE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2112: error: 'CGLO_CONSTRAINT' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2113: error: 'CGLO_RERUNMD' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2114: error: 'MD_READ_EKIN' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2114: error: 'CGLO_READEKIN' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 3 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 4 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 5 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 6 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 8 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 9 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 10 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 12 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 13 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 16 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 17 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 18 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 19 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 22 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 23 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: warning: passing argument 24 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2120: error: too many arguments to function 'compute_globals'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 3 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 4 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 5 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 6 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 8 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 9 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 10 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 12 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 13 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 16 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 17 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 18 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 19 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 22 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 23 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: warning: passing argument 24 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2131: error: too many arguments to function 'compute_globals'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2135: error: 'MD_STARTFROMCPT' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2152: warning: implicit declaration of function 'init_bufstate'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2152: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2165: warning: implicit declaration of function 'init_npt_vars'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2165: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2173: warning: implicit declaration of function 'constr_rmsd'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2173: warning: format '%.2e' expects type 'double', but argument 3 has type 'int'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2218: error: 'runtime' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2220: error: 'ewcRUN' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2263: warning: implicit declaration of function 'max_cutoff2'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2271: warning: implicit declaration of function 'calc_shifts'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2298: error: 'ewcSTEP' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2332: warning: implicit declaration of function 'do_per_step'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2337: warning: implicit declaration of function 'update_annealing_target_temp'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2374: error: 'MD_RERUN_VSITE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2385: warning: implicit declaration of function 'mk_mshift'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2386: warning: implicit declaration of function 'shift_self'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2393: warning: implicit declaration of function 'unshift_self'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2462: warning: implicit declaration of function 'correct_box'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2469: warning: implicit declaration of function 'dd_collect_state'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2476: error: 'ewcDOMDEC' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2490: warning: implicit declaration of function 'print_ebin_header'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 3 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 4 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 5 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 6 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 8 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 9 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 10 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 12 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 13 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 18 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 19 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 22 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 23 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: warning: passing argument 24 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2508: error: too many arguments to function 'compute_globals'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2568: error: 'CGLO_STOPCM' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2572: error: 'GMX_FORCE_STATECHANGED' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2573: error: 'GMX_FORCE_DYNAMICBOX' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2574: error: 'GMX_FORCE_ALLFORCES' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2575: error: 'GMX_FORCE_DOLR' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2576: error: 'GMX_FORCE_SEPLRF' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2577: error: 'GMX_FORCE_VIRIAL' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2578: error: 'GMX_FORCE_DHDL' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2584: warning: implicit declaration of function 'relax_shell_flexcon'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2608: warning: implicit declaration of function 'do_force'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2613: error: 'GMX_FORCE_NS' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2651: warning: implicit declaration of function 'trotter_update'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2656: warning: implicit declaration of function 'update_tcouple'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2659: warning: implicit declaration of function 'update_coords'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2705: warning: implicit declaration of function 'update_constraints'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2733: error: 'CGLO_ENERGY' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2737: error: 'CGLO_ITERATE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2738: error: 'CGLO_FIRSTITERATE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2739: error: 'CGLO_SCALEEKIN' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 3 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 4 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 5 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 6 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 8 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 9 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 10 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 12 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 13 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 16 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 17 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 18 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 19 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 22 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 23 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: warning: passing argument 24 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2740: error: too many arguments to function 'compute_globals'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2781: error: 'sepdvdlformat' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2795: warning: implicit declaration of function 'NPT_energy'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2819: error: 'MDOF_X' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2820: error: 'MDOF_V' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2821: error: 'MDOF_F' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2822: error: 'MDOF_XTC' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2841: error: 'ewcTRAJ' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2862: warning: implicit declaration of function 'write_traj'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2871: error: 'MD_CONFOUT' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2883: warning: implicit declaration of function 'do_pbc_mtop'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2925: warning: implicit declaration of function 'gmx_gettime'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2928: warning: implicit declaration of function 'gmx_get_stop_condition'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2937: error: 'gmx_stop_cond_next_ns' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2939: error: 'gmx_stop_cond_next' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2946: warning: implicit declaration of function 'gmx_get_signal_name'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2947: warning: format '%s' expects type 'char ', but argument 3 has type 'int'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2953: warning: format '%s' expects type 'char *', but argument 3 has type 'int'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:2989: warning: implicit declaration of function 'natoms_beyond_ns_buffer'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3041: error: 'ewcUPDATE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3079: warning: implicit declaration of function 'update_pcouple'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 3 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 4 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 5 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 6 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 8 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 9 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 10 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 12 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 13 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 16 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 17 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 18 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 19 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 22 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 23 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: warning: passing argument 24 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3117: error: too many arguments to function 'compute_globals'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3159: error: 'ewcVSITECONSTR' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 3 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 4 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 5 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 6 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 8 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 9 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 10 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 12 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 13 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 16 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 17 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 18 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 19 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 20 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 21 of 'compute_globals' makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 22 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 23 of 'compute_globals' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: warning: passing argument 24 of 'compute_globals' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3193: error: too many arguments to function 'compute_globals'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3216: warning: implicit declaration of function 'update_box'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3267: warning: implicit declaration of function 'sum_dhdl'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3291: warning: implicit declaration of function 'vrescale_energy'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3317: warning: implicit declaration of function 'runtime_upd_proc'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3329: warning: implicit declaration of function 'upd_mdebin'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3336: warning: implicit declaration of function 'upd_mdebin_step'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3342: warning: implicit declaration of function 'print_ebin'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3344: error: 'eprNORMAL' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3362: warning: implicit declaration of function 'gmx_got_usr_signal'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3368: warning: implicit declaration of function 'print_time'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3453: warning: implicit declaration of function 'dd_cycles_add'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3453: error: 'ddCyclStep' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3456: warning: implicit declaration of function 'wcycle_get_reset_counters'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3460: error: too many arguments to function 'reset_all_counters'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3468: warning: implicit declaration of function 'write_sto_conf_mtop'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3474: warning: implicit declaration of function 'runtime_end'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3484: warning: implicit declaration of function 'gmx_pme_finish'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3492: error: 'eprAVER' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3496: warning: implicit declaration of function 'done_mdoutf'
/data0/FAHdev/gmx/src/tools/gmx_membed.c: In function 'mdrunner_membed':
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3553: error: 'gmx_vsite_t' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3553: error: 'vsite' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3560: error: 'gmx_runtime_t' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3560: error: expected ';' before 'runtime'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3594: error: 'MD_APPENDFILES' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3603: warning: implicit declaration of function 'read_tpx_state'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3614: warning: implicit declaration of function 'init_parallel'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3617: warning: implicit declaration of function 'set_state_entries'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3619: warning: implicit declaration of function 'can_use_allvsall'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3622: error: 'MD_PARTDEC' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3646: warning: implicit declaration of function 'gmx_mtop_global_atoms'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3646: error: incompatible types in assignment
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3795: warning: implicit declaration of function 'set_pbc'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3859: warning: implicit declaration of function 'init_disres'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3870: warning: implicit declaration of function 'init_orires'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3903: warning: implicit declaration of function 'load_checkpoint'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3910: error: 'MD_READ_RNG' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3914: error: 'MD_READ_EKIN' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3919: error: 'MD_SEPPOT' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3942: warning: implicit declaration of function 'init_domain_decomposition'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3947: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3949: warning: implicit declaration of function 'make_dd_communicators'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3966: error: 'epbc_names' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3978: warning: implicit declaration of function 'wallcycle_init'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3978: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:3997: warning: implicit declaration of function 'bcast_state_setup'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4007: warning: implicit declaration of function 'bcast_state'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4014: warning: implicit declaration of function 'init_dihres'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4018: warning: implicit declaration of function 'mk_forcerec'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4018: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4019: warning: implicit declaration of function 'init_forcerec'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4033: warning: implicit declaration of function 'init_QMMMrec'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4040: warning: implicit declaration of function 'init_mdatoms'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4040: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4043: warning: implicit declaration of function 'init_vsite'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4056: warning: implicit declaration of function 'do_pbc_first_mtop'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4064: warning: implicit declaration of function 'construct_vsites_mtop'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4074: error: 'eel_names' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4076: warning: implicit declaration of function 'gmx_pppm_init'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4077: error: 'MD_REPRODUCIBLE' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4101: warning: implicit declaration of function 'calc_ewaldcoeff'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4120: warning: implicit declaration of function 'gmx_pme_init'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4143: warning: implicit declaration of function 'signal_handler_install'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4155: warning: implicit declaration of function 'init_constraints'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4155: warning: assignment makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4159: warning: implicit declaration of function 'dd_init_bondeds'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4160: error: 'MD_DDBONDCHECK' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4162: warning: implicit declaration of function 'set_dd_parameters'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4164: warning: implicit declaration of function 'setup_dd_grid'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4179: error: 'runtime' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 10 of 'do_md_membed' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 11 of 'do_md_membed' makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 12 of 'do_md_membed' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 13 of 'do_md_membed' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 14 of 'do_md_membed' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 15 of 'do_md_membed' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 16 of 'do_md_membed' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 17 of 'do_md_membed' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 18 of 'do_md_membed' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 19 of 'do_md_membed' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 20 of 'do_md_membed' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: error: incompatible type for argument 24 of 'do_md_membed'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 25 of 'do_md_membed' makes integer from pointer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 26 of 'do_md_membed' makes pointer from integer without a cast
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 28 of 'do_md_membed' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: warning: passing argument 29 of 'do_md_membed' from incompatible pointer type
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: error: incompatible type for argument 30 of 'do_md_membed'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: error: incompatible type for argument 31 of 'do_md_membed'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4181: error: too many arguments to function 'do_md_membed'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4191: warning: implicit declaration of function 'gmx_pmeonly'
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4210: error: 'ewcRUN' undeclared (first use in this function)
/data0/FAHdev/gmx/src/tools/gmx_membed.c:4215: warning: implicit declaration of function 'finish_run'
make2: *
* [src/tools/CMakeFiles/gmxana.dir/gmx_membed.c.o] Error 1

History

#1 Updated by David van der Spoel about 9 years ago

I've temporarily disabled compiling g_membed.

#2 Updated by David van der Spoel about 9 years ago

This has been resolved now. Master compiles again.

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