check_bonds_timestep() only reports the first suspicious bond
check_bonds_timestep() (http://redmine.gromacs.org/projects/gromacs/repository/revisions/release-4-5-patches/entry/src/kernel/grompp.c#L190) sets
w_moltype for the first
moltype with a suspicious bond, but the execution flow is such that a note is printed only for the first such
I think it might be clearer to a user who's done the expected flexibility vs constraints mismatch if they got a note for all such bonds and molecule types.
I think that's a fairly simple matter of moving the output statements inside three of the
for loops, and re-clearing