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Bug #8

g_covar SegFaults with -debug in gmx 3.1.4

Added by Dmytro Kovalskyy over 14 years ago. Updated almost 14 years ago.

Status:
Closed
Priority:
High
Assignee:
Erik Lindahl
Category:
analysis tools
Target version:
Affected version - extra info:
Affected version:
Difficulty:
uncategorized
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Description

[root@violet r1000]# g_covar f
g_covar/4vec/filt_filt_double_10n_r1000_fit-Ca1v4.xtc -s
g_covar/4vec/average.pdb -debug
:
) G R O M A C S (-:

God Rules Over Mankind, Animals, Cosmos and Such 
:-)  VERSION 3.2.1  (-:

<skip>

++++++ PLEASE CITE THE FOLLOWING REFERENCE ++++++
D. Eisenberg and A. D. McLachlan
Solvation energy in protein folding and binding
Nature 319 (1986) pp. 199-203
-------- -------- --- Thank You --- -------- --------

Opening library file /usr/local/share/gromacs/top/aminoacids.dat
Opening library file /usr/local/share/gromacs/top/atommass.dat
Segmentation fault

In GMX 3.1.4 everything was Ok

History

#1 Updated by Erik Lindahl about 14 years ago

Dmytro,

Sorry for letting this linger, but due to the subject it looked like a bug report against a deprecated release
(3.1.4).

Could you possibly check if it still fails in 3.3 with your system?

#2 Updated by David van der Spoel almost 14 years ago

This was due to printing NULL variables. Resolved in 3.3. and 4.0

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