Feature #1247

Updated by Mark Abraham over 6 years ago

Analysis tools tend to have code that is based on assumptions about atom names, that (e.g.) get invalidated when we add CHARMM into the mix, because it names amide nitrogen HN, not H. Several past bug-fixes have fixed individual cases of this.

This kind of stuff should be re-implemented, either by calling the selection machinery with logic that is constructed in a single place, or by deprecating a specific tool in favour of calling a general tool with a specific selection.