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Mark Abraham

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12/01/2016

11:05 PM GROMACS Revision 895ee04b: Add INSTALL-dev to aid people doing unusual builds
Occasionally it is useful to build GROMACS other than from an official
release tarball, e.g. when testing a new featu...
01:24 AM GROMACS Revision 91fd36e3: Fix minor trjconv bug
gmx trjconv -novel -f in.pdb -o out.pdb did not work as was probably
intended, because ftpin had an excessive large s...

11/28/2016

10:14 PM GROMACS Feature #2082: GMX_USE_PLUGINS=ON is incompatible with GMX_PREFER_STATIC_LIBS=ON -- cmake should ...
@Teemu Yes, I already agreed that my initial proposal introduces an undesirable way to get a new fatal error. It woul...
06:37 PM GROMACS Task #2084: MPI and stderr/log output
Thanks.
> In the future it would be nice if the multi-node simulation could finalize the log gracefully as well.
...
05:45 PM GROMACS Feature #2082: GMX_USE_PLUGINS=ON is incompatible with GMX_PREFER_STATIC_LIBS=ON -- cmake should ...
Teemu Murtola wrote:
> I don't mind much about what is the default behavior, but I agree with Roland that it makes l...
04:52 PM GROMACS Wiki edit: Mark's_scratchpad_for_improvements (#5)
04:08 PM GROMACS Feature #2082: GMX_USE_PLUGINS=ON is incompatible with GMX_PREFER_STATIC_LIBS=ON -- cmake should ...
@Chris Thanks, that clarifies that the combination of GMX_PREFER_STATIC_LIBS=on and BUILD_SHARED_LIBS=on isn't reliab...

11/24/2016

01:53 PM GROMACS Feature #2082 (Fix uploaded): GMX_USE_PLUGINS=ON is incompatible with GMX_PREFER_STATIC_LIBS=ON -...
The above patch improves the cmake interface, but we should leave the issue open because the underlying issue of whet...
01:52 PM GROMACS Feature #2082: GMX_USE_PLUGINS=ON is incompatible with GMX_PREFER_STATIC_LIBS=ON -- cmake should ...
GMX_PREFER_STATIC_LIBS merely sets the default for BUILD_SHARED_LIBS to off, but the code seems like it should work w...
01:16 PM GROMACS Feature #2082: GMX_USE_PLUGINS=ON is incompatible with GMX_PREFER_STATIC_LIBS=ON -- cmake should ...
That would be a good work-around for users.
I don't know enough about how the machinery for dynamic loading works,...

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