Mark Abraham





12:34 AM GROMACS Bug #2989: (thread-) MPI setup hanging on bs_jetson_tk1
I didn't spot anything that suggested the code is a problem :-( I suggest we revert my change (on Monday!)
04:41 PM GROMACS Bug #2989: (thread-) MPI setup hanging on bs_jetson_tk1
ok i'll look over the code again on the flight
03:38 PM GROMACS Bug #2986: Post submit failing in two configurations
I've definitely seen timeouts, and the first commit that introduced them was definitely the one where I reorganized t...


11:14 PM GROMACS Revision 763e638f: Move code handling mdrun -gpu_id to taskassignment module
Also made the error message report all incompatible GPU IDs, not just
the first, and do so by throwing an exception.
03:30 AM GROMACS Bug #2981 (New): segfault in opencl build

On an agent config @gcc-8 openmp simd=avx2_256 gpuhw=amd opencl-1.2 clFFT-2.14 buildfftw host=bs_gpu01,bs_gpu01@, a...


11:13 PM GROMACS Revision b277931f: Fix pygments detection for sphinx for docs build
Got broken in 29616660 but somehow wasn't a problem in the docs build
on the dedicated slave for that.
Refs #2615
05:35 PM GROMACS Bug #2709: pygments cannot be detected with PythonInterp is python3
Not sure if relevant, but discussion related to this issue at
05:34 PM GROMACS Feature #2615 (Accepted): Switch to Python3
We will need to change our docs-build link checker, as the one we used to use requires python2, is unmaintained, and ...
10:42 AM GROMACS Bug #2974: position-restraints regressiontest fails on intel GPU
I reproduced on my i7-7500U (neo), but without leads, we'll have to bump this for now


06:05 PM GROMACS Revision a6792558: Use RAII approaches for hardware information detection
Eliminated gmx_hardware_info_free. The lifetime of the hardware info
should be from the first time it is needed until...

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