Mark Abraham

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  • Last connection: 06/28/2015

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Reported issues: 163

06/30/2015

01:59 PM Gromacs Revision 4372f13d: Document how to add and use NVML support
Change-Id: I8ca7c5d1b163a78559a048ca6cc5b099f34c6cd6
01:24 PM Gromacs Bug #1756: incorrect CUDA inter-stream synchronization on CC >=3.5 devices
Applied in changeset commit:3fed39606056516812d4ba0e7ad25ae9a8305608.
01:24 PM Gromacs Bug #1673 (Resolved): mis-use of simd.h after refactoring
Applied in changeset commit:3df2b06e2896161e5f501950b6a065e2375559e2.

06/29/2015

06:28 PM Gromacs Bug #1342: Appended .edr files and NaN
Erik Lindahl wrote:
> Mark, was the final issue you observed fixed by https://gerrit.gromacs.org/#/c/4778/ (which is...
06:25 PM Gromacs Bug #1756 (Resolved): incorrect CUDA inter-stream synchronization on CC >=3.5 devices
https://gerrit.gromacs.org/#/c/4801/ fixed this potential race. Szilard's test code was completely unable to observe ...
02:33 PM Gromacs Task #1587: improve the configurability of regression tests
Concern and discussion over the state of pdb2gmx and its tests took place here https://gerrit.gromacs.org/#/c/4772/

06/28/2015

06:47 PM Gromacs Task #1758 (New): Verlet scheme reorganization / modularization
There's lots of things to consider here, so I'll edit this later when I have more time.
Meanwhile, the handling of...

06/26/2015

06:21 PM Gromacs Bug #1756: incorrect CUDA inter-stream synchronization on CC >=3.5 devices
We have discussed a plan to add an extra local atom whose position can be set at the end of the non-local force kerne...

06/24/2015

11:52 PM Gromacs Bug #1754: tune_pme in gromacs 5 does not use "gmx mdrun" by default.
But by default there should be a symlink mdrun wherever gmx is installed. Frankly, I think the best behaviour is to r...
11:58 AM Gromacs Bug #1342: Appended .edr files and NaN
As noted at https://gerrit.gromacs.org/#/c/4761/:
I ran some tests comparing release-4-6 HEAD to patch set 2 of ht...

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