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Francesco Oteri

  • Registered on: 11/05/2012
  • Last connection: 12/10/2012

Issues

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12/10/2012

07:42 PM GROMACS Bug #1065: Error with MARTINI depending by the box size
Now I updated the script crea_topo in order to:
1)minimize the protein in vacuo
2)water molecules closer then 0.8 n...
06:05 PM GROMACS Bug #1065 (Closed): Error with MARTINI depending by the box size
Dear gromacs users,
I am facing a very tricky problem in building a stable topology.
In particular I am trying to ...

11/12/2012

10:25 AM GROMACS Feature #1033 (Rejected): g_rmsf: different group for fitting and rmsf calculation
Is it possible restoring the feature in g_rmsf where
the program prompts for different group, one for fitting
and a...
10:23 AM GROMACS Bug #1032 (Rejected): g_rmsf doesn't add &
Dear developers,
I noticed that g_rmsf (v4.5.5) doesn't output the "&" at the end
of the xvg files.
Moreover, in ...

11/05/2012

09:00 PM GROMACS Feature #1030: adding -tu option to some analysis tools
I mean I cannot use nanoseconds to use -b and -e flags.
I'd like to use something like:
g_rmsf -b 30 -e 50 -tu ns ...
04:38 PM GROMACS Feature #1030 (Fix uploaded): adding -tu option to some analysis tools
Good morning,
I think it is useful adding the option -tu in g_rmsf.
Nowadays people are simulating for several nan...
04:36 PM GROMACS Feature #1029 (Closed): -tu option in g_rmsf
Good morning,
I think it is useful adding the option -tu in g_rmsf.
Nowadays people are simulating for several nan...

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