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Magnus Lundborg

  • Registered on: 03/12/2013
  • Last connection: 06/04/2017

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06/11/2017

10:30 PM GROMACS Revision 9c379aab: Updated TNG to version 1.8
Corresponds to commit 9d76cd757cfe13eefc554407683b462c4f414390
in the TNG repository.
Added data block for atom mass...

06/02/2017

12:44 PM TNG trajectory library Feature #2188: Masses missing from TNG specification
Definitely. There is now a patch (not merged) for the masses data block in TNG.
Writing charges and masses from GR...
11:44 AM TNG trajectory library Feature #2188: Masses missing from TNG specification
Unless something is broken the molecule system, with atoms and bonds, should be written by gmx_tng_prepare_md_writing().

05/27/2017

12:26 PM TNG trajectory library Feature #2188: Masses missing from TNG specification
This should be quite straight-forward to add. It will just be a matter of adding another block type for atom masses (...

12/07/2015

04:45 PM GROMACS Feature #1863 (Resolved): write tng files with velocities from mdrun
Applied in changeset commit:3b95736813d66d69aab2da234b99807020e61da3.

12/05/2015

12:23 AM GROMACS Revision 3b957368: Write forces and velocities to compressed TNG.
If there is no uncompressed coordinate output write forces
and velocities to the TNG file with compressed coordinate
...

11/30/2015

07:28 AM GROMACS Revision 88864e74: Fixed typos in output.
Change-Id: I706c489f186c0d0367fca2cf4581186a0a97a291

11/26/2015

10:18 PM GROMACS Feature #1864: write tng files with energies
Indeed, energies and forces are only compressed losslessly (currently gzip is the only compressor available for lossl...
12:02 PM GROMACS Feature #1864: write tng files with energies
I agree that we need to fix this. I have been planning to look into it for a long time, but other things have always ...

11/25/2015

11:36 PM GROMACS Revision 75635a2b: Use local variables instead of those in *ir.
We set vout and fout to that values of ir->nstvout and ir->nstfout
Use the local variables.
Change-Id: I17dbc1f9c2fd...

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