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5.1

First minor release after 5.0

100%

55 issues   (55 closed — 0 open)

Issues by
Bug

36/36
Feature

6/6
Task

13/13
Related issues
Bug #1180: Online manual formatting broken
Bug #1542: two unit tests fail on 32-bit ARM
Bug #1546: Legacy tools tests failed on armv7a with SIGBUS
Bug #1547: MDRUN tools tests failed on armv7a with SIGBUS
Bug #1554: build of template.cpp is broken
Bug #1559: Writing TNG files fails on Xeon Phi
Bug #1586: xvg_format=exvgNULL by default
Bug #1590: COM pulling in geometry cylinder does not conserve energy
Bug #1615: possible bug in shell code
Bug #1637: mdrun -multidir does not respect -deffnm option
Bug #1674: "struct swap" creates ambiguity with C++ swap functions
Bug #1677: floating-point exceptions found
Bug #1681: use of incorrect initial value of variable
Bug #1683: mdrun-only build does not link correctly
Bug #1685: mdrun reports incorrect thread count use
Bug #1686: bonded force regression
Bug #1700: tarball man pages are too deep in the file hierarchy
Bug #1701: arrayref doesn't always work on BlueGene/Q xlc
Bug #1703: be less vocal about affinity where it is not relevant
Bug #1706: NVML message reports wrong version
Bug #1710: timer resetting with -nb cpu crash
Bug #1717: Broken error handling in function gmx_tmpnam
Bug #1724: membed docs missing
Bug #1725: Failing unit tests on Power7 (big endian)
Bug #1726: ICC 15.0.2 bug
Bug #1736: regressiontest check target's dependency on gmx is broken
Bug #1754: tune_pme in gromacs 5 does not use "gmx mdrun" by default.
Bug #1760: DLB + PME tuning inconsistency
Bug #1762: arithmetic exception in pair search with GPUs
Bug #1765: the OpenCL build does not compile
Bug #1769: -deffnm ignored when using -multidir
Bug #1776: Resource efficiency check incorrectly warns with thread-MPI
Bug #1779: OpenCL MD not stable maybe because of Parrinello-Rahman
Bug #1784: OpenCL queues need clFlush for correct concurrency
Bug #1803: mdrun ignores -nt option value, except for 1
Bug #1984: gmx solvate (monoatomic solvents?)
Feature #911: implement CMake option to enable fully static binaries
Feature #1111: use of rsqrt()
Feature #1522: Implement shell prediction without charge groups
Feature #1577: Extend flat-bottom position restraints
Feature #1597: OpenCL port
Feature #1619: gangle add x and y axis to second vector group options
Task #655: Improve selection error reporting / switch to exceptions
Task #679: g_select documentation should be included in the manual
Task #1320: renaming of MPI-related conditional-compilation machinery
Task #1424: remove mdrun -testverlet option
Task #1430: FindGROMACS.cmake version detection
Task #1454: Remove gmx_header_config_gen.h
Task #1455: fix regressiontests to correctly rerun and report the mdrun usage
Task #1557: Uniform usage of include paths
Task #1687: improve readability of help/man output
Task #1694: large amount of serial code with p-coupling
Task #1696: FFTW auto-build and advice is no longer generally applicable
Task #1699: document change in andersen thermostat behaviour in the code
Task #1783: investigate Apple OpenCL runtime usability