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error_openmpi_4_0_0.txt

Yuxuan Zhuang, 03/11/2020 04:31 PM

 
1
[gpu18:18896] *** Process received signal ***
2
[gpu18:18896] Signal: Segmentation fault (11)
3
[gpu18:18896] Signal code: Address not mapped (1)
4
[gpu18:18896] Failing at address: (nil)
5
[gpu18:18896] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f3324c2df20]
6
[gpu18:18896] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f331deddf14]
7
[gpu18:18896] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f331cdcc924]
8
[gpu18:18896] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f331cdd056e]
9
[gpu18:18896] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f331d06405d]
10
[gpu18:18896] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f331b4b361f]
11
[gpu18:18896] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f331d028376]
12
[gpu18:18896] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f33255ce238]
13
[gpu18:18896] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f33255fc715]
14
[gpu18:18896] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f3325a53305]
15
[gpu18:18896] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f3325e8f329]
16
[gpu18:18896] [11] gmx_mpi(+0x60b2)[0x55c4c659b0b2]
17
[gpu18:18896] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f3324c10b97]
18
[gpu18:18896] [13] gmx_mpi(+0x61ea)[0x55c4c659b1ea]
19
[gpu18:18896] *** End of error message ***
20
[gpu18:18897] *** Process received signal ***
21
[gpu18:18897] Signal: Segmentation fault (11)
22
[gpu18:18897] Signal code: Address not mapped (1)
23
[gpu18:18897] Failing at address: (nil)
24
[gpu18:18897] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f895b598f20]
25
[gpu18:18897] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f8954848f14]
26
[gpu18:18897] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f8953737924]
27
[gpu18:18897] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f895373b56e]
28
[gpu18:18897] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f89539cf05d]
29
[gpu18:18897] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f8951e1e61f]
30
[gpu18:18897] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f8953993376]
31
[gpu18:18897] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f895bf39238]
32
[gpu18:18897] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f895bf67715]
33
[gpu18:18897] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f895c3be305]
34
[gpu18:18897] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f895c7fa329]
35
[gpu18:18897] [11] gmx_mpi(+0x60b2)[0x561af50d40b2]
36
[gpu18:18897] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f895b57bb97]
37
[gpu18:18897] [13] gmx_mpi(+0x61ea)[0x561af50d41ea]
38
[gpu18:18897] *** End of error message ***
39
[gpu18:18898] *** Process received signal ***
40
[gpu18:18898] Signal: Segmentation fault (11)
41
[gpu18:18898] Signal code: Address not mapped (1)
42
[gpu18:18898] Failing at address: (nil)
43
[gpu18:18898] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f2c7adf0f20]
44
[gpu18:18898] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f2c740a0f14]
45
[gpu18:18898] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f2c72f8f924]
46
[gpu18:18898] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f2c72f9356e]
47
[gpu18:18898] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f2c7322705d]
48
[gpu18:18898] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f2c7167661f]
49
[gpu18:18898] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f2c731eb376]
50
[gpu18:18898] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f2c7b791238]
51
[gpu18:18898] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f2c7b7bf715]
52
[gpu18:18898] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f2c7bc16305]
53
[gpu18:18898] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f2c7c052329]
54
[gpu18:18898] [11] gmx_mpi(+0x60b2)[0x5633b5d480b2]
55
[gpu18:18898] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f2c7add3b97]
56
[gpu18:18898] [13] gmx_mpi(+0x61ea)[0x5633b5d481ea]
57
[gpu18:18898] *** End of error message ***
58
[gpu18:18899] *** Process received signal ***
59
[gpu18:18899] Signal: Segmentation fault (11)
60
[gpu18:18899] Signal code: Address not mapped (1)
61
[gpu18:18899] Failing at address: (nil)
62
[gpu18:18899] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f3ed9942f20]
63
[gpu18:18899] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f3ed2bf2f14]
64
[gpu18:18899] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f3ed1ae1924]
65
[gpu18:18899] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f3ed1ae556e]
66
[gpu18:18899] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f3ed1d7905d]
67
[gpu18:18899] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f3ed01c861f]
68
[gpu18:18899] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f3ed1d3d376]
69
[gpu18:18899] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f3eda2e3238]
70
[gpu18:18899] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f3eda311715]
71
[gpu18:18899] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f3eda768305]
72
[gpu18:18899] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f3edaba4329]
73
[gpu18:18899] [11] gmx_mpi(+0x60b2)[0x561e390710b2]
74
[gpu18:18899] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f3ed9925b97]
75
[gpu18:18899] [13] gmx_mpi(+0x61ea)[0x561e390711ea]
76
[gpu18:18899] *** End of error message ***
77
[gpu18:18900] *** Process received signal ***
78
[gpu18:18900] Signal: Segmentation fault (11)
79
[gpu18:18900] Signal code: Address not mapped (1)
80
[gpu18:18900] Failing at address: (nil)
81
[gpu18:18900] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f419def2f20]
82
[gpu18:18900] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f41971a2f14]
83
[gpu18:18900] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f4196091924]
84
[gpu18:18900] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f419609556e]
85
[gpu18:18900] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f419632905d]
86
[gpu18:18900] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f419477861f]
87
[gpu18:18900] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f41962ed376]
88
[gpu18:18900] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f419e893238]
89
[gpu18:18900] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f419e8c1715]
90
[gpu18:18900] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f419ed18305]
91
[gpu18:18900] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f419f154329]
92
[gpu18:18900] [11] gmx_mpi(+0x60b2)[0x56016e8e80b2]
93
[gpu18:18900] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f419ded5b97]
94
[gpu18:18900] [13] gmx_mpi(+0x61ea)[0x56016e8e81ea]
95
[gpu18:18900] *** End of error message ***
96
[gpu18:18901] *** Process received signal ***
97
[gpu18:18901] Signal: Segmentation fault (11)
98
[gpu18:18901] Signal code: Address not mapped (1)
99
[gpu18:18901] Failing at address: (nil)
100
[gpu18:18901] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f805487ff20]
101
[gpu18:18901] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f804db2ff14]
102
[gpu18:18901] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f804ca1e924]
103
[gpu18:18901] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f804ca2256e]
104
[gpu18:18901] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f804ccb605d]
105
[gpu18:18901] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f804b10561f]
106
[gpu18:18901] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f804cc7a376]
107
[gpu18:18901] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f8055220238]
108
[gpu18:18901] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f805524e715]
109
[gpu18:18901] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f80556a5305]
110
[gpu18:18901] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f8055ae1329]
111
[gpu18:18901] [11] gmx_mpi(+0x60b2)[0x5606c08b30b2]
112
[gpu18:18901] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f8054862b97]
113
[gpu18:18901] [13] gmx_mpi(+0x61ea)[0x5606c08b31ea]
114
[gpu18:18901] *** End of error message ***
115
[gpu18:18902] *** Process received signal ***
116
[gpu18:18902] Signal: Segmentation fault (11)
117
[gpu18:18902] Signal code: Address not mapped (1)
118
[gpu18:18902] Failing at address: (nil)
119
[gpu18:18902] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f9465c07f20]
120
[gpu18:18902] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f945eeb7f14]
121
[gpu18:18902] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f945dda6924]
122
[gpu18:18902] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f945ddaa56e]
123
[gpu18:18902] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f945e03e05d]
124
[gpu18:18902] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f945c48d61f]
125
[gpu18:18902] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f945e002376]
126
[gpu18:18902] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f94665a8238]
127
[gpu18:18902] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f94665d6715]
128
[gpu18:18902] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f9466a2d305]
129
[gpu18:18902] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f9466e69329]
130
[gpu18:18902] [11] gmx_mpi(+0x60b2)[0x563af13b70b2]
131
[gpu18:18902] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f9465beab97]
132
[gpu18:18902] [13] gmx_mpi(+0x61ea)[0x563af13b71ea]
133
[gpu18:18902] *** End of error message ***
134
[gpu18:18903] *** Process received signal ***
135
[gpu18:18903] Signal: Segmentation fault (11)
136
[gpu18:18903] Signal code: Address not mapped (1)
137
[gpu18:18903] Failing at address: (nil)
138
[gpu18:18903] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f40f201bf20]
139
[gpu18:18903] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f40eb2cbf14]
140
[gpu18:18903] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f40ea1ba924]
141
[gpu18:18903] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f40ea1be56e]
142
[gpu18:18903] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f40ea45205d]
143
[gpu18:18903] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f40e88a161f]
144
[gpu18:18903] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f40ea416376]
145
[gpu18:18903] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f40f29bc238]
146
[gpu18:18903] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f40f29ea715]
147
[gpu18:18903] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f40f2e41305]
148
[gpu18:18903] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f40f327d329]
149
[gpu18:18903] [11] gmx_mpi(+0x60b2)[0x55eddb3d80b2]
150
[gpu18:18903] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f40f1ffeb97]
151
[gpu18:18903] [13] gmx_mpi(+0x61ea)[0x55eddb3d81ea]
152
[gpu18:18903] *** End of error message ***
153
[gpu18:18905] *** Process received signal ***
154
[gpu18:18905] Signal: Segmentation fault (11)
155
[gpu18:18905] Signal code: Address not mapped (1)
156
[gpu18:18905] Failing at address: (nil)
157
[gpu18:18905] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fe3d6a71f20]
158
[gpu18:18905] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fe3cfd21f14]
159
[gpu18:18905] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fe3cec10924]
160
[gpu18:18905] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fe3cec1456e]
161
[gpu18:18905] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fe3ceea805d]
162
[gpu18:18905] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fe3cd2f761f]
163
[gpu18:18905] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fe3cee6c376]
164
[gpu18:18905] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fe3d7412238]
165
[gpu18:18905] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fe3d7440715]
166
[gpu18:18905] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fe3d7897305]
167
[gpu18:18905] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fe3d7cd3329]
168
[gpu18:18905] [11] gmx_mpi(+0x60b2)[0x55d891e860b2]
169
[gpu18:18905] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fe3d6a54b97]
170
[gpu18:18905] [13] gmx_mpi(+0x61ea)[0x55d891e861ea]
171
[gpu18:18905] *** End of error message ***
172
[gpu18:18904] *** Process received signal ***
173
[gpu18:18904] Signal: Segmentation fault (11)
174
[gpu18:18904] Signal code: Address not mapped (1)
175
[gpu18:18904] Failing at address: (nil)
176
[gpu18:18904] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fc33293bf20]
177
[gpu18:18904] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fc32bbebf14]
178
[gpu18:18904] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fc32aada924]
179
[gpu18:18904] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fc32aade56e]
180
[gpu18:18904] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fc32ad7205d]
181
[gpu18:18904] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fc3291c161f]
182
[gpu18:18904] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fc32ad36376]
183
[gpu18:18904] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fc3332dc238]
184
[gpu18:18904] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fc33330a715]
185
[gpu18:18904] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fc333761305]
186
[gpu18:18904] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fc333b9d329]
187
[gpu18:18904] [11] gmx_mpi(+0x60b2)[0x561c196d30b2]
188
[gpu18:18904] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fc33291eb97]
189
[gpu18:18904] [13] gmx_mpi(+0x61ea)[0x561c196d31ea]
190
[gpu18:18904] *** End of error message ***
191
[gpu18:18906] *** Process received signal ***
192
[gpu18:18906] Signal: Segmentation fault (11)
193
[gpu18:18906] Signal code: Address not mapped (1)
194
[gpu18:18906] Failing at address: (nil)
195
[gpu18:18906] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f9d75a40f20]
196
[gpu18:18906] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f9d6ecf0f14]
197
[gpu18:18906] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f9d6dbdf924]
198
[gpu18:18906] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f9d6dbe356e]
199
[gpu18:18906] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f9d6de7705d]
200
[gpu18:18906] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f9d6c2c661f]
201
[gpu18:18906] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f9d6de3b376]
202
[gpu18:18906] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f9d763e1238]
203
[gpu18:18906] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f9d7640f715]
204
[gpu18:18906] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f9d76866305]
205
[gpu18:18906] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f9d76ca2329]
206
[gpu18:18906] [11] gmx_mpi(+0x60b2)[0x55a12cfc00b2]
207
[gpu18:18906] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f9d75a23b97]
208
[gpu18:18906] [13] gmx_mpi(+0x61ea)[0x55a12cfc01ea]
209
[gpu18:18906] *** End of error message ***
210
[gpu18:18909] *** Process received signal ***
211
[gpu18:18909] Signal: Segmentation fault (11)
212
[gpu18:18909] Signal code: Address not mapped (1)
213
[gpu18:18909] Failing at address: (nil)
214
[gpu18:18909] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fe1ff77bf20]
215
[gpu18:18909] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fe1f8a2bf14]
216
[gpu18:18909] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fe1f791a924]
217
[gpu18:18909] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fe1f791e56e]
218
[gpu18:18909] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fe1f7bb205d]
219
[gpu18:18909] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fe1f600161f]
220
[gpu18:18909] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fe1f7b76376]
221
[gpu18:18909] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fe20011c238]
222
[gpu18:18909] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fe20014a715]
223
[gpu18:18909] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fe2005a1305]
224
[gpu18:18909] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fe2009dd329]
225
[gpu18:18909] [11] gmx_mpi(+0x60b2)[0x55d0e8ed30b2]
226
[gpu18:18909] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fe1ff75eb97]
227
[gpu18:18909] [13] gmx_mpi(+0x61ea)[0x55d0e8ed31ea]
228
[gpu18:18909] *** End of error message ***
229
[gpu18:18907] *** Process received signal ***
230
[gpu18:18907] Signal: Segmentation fault (11)
231
[gpu18:18907] Signal code: Address not mapped (1)
232
[gpu18:18907] Failing at address: (nil)
233
[gpu18:18907] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f0ae19dbf20]
234
[gpu18:18907] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f0adac8bf14]
235
[gpu18:18907] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f0ad9b7a924]
236
[gpu18:18907] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f0ad9b7e56e]
237
[gpu18:18907] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f0ad9e1205d]
238
[gpu18:18907] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f0ad826161f]
239
[gpu18:18907] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f0ad9dd6376]
240
[gpu18:18907] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f0ae237c238]
241
[gpu18:18907] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f0ae23aa715]
242
[gpu18:18907] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f0ae2801305]
243
[gpu18:18907] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f0ae2c3d329]
244
[gpu18:18907] [11] gmx_mpi(+0x60b2)[0x55a4e2dad0b2]
245
[gpu18:18907] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f0ae19beb97]
246
[gpu18:18907] [13] gmx_mpi(+0x61ea)[0x55a4e2dad1ea]
247
[gpu18:18907] *** End of error message ***
248
[gpu18:18908] *** Process received signal ***
249
[gpu18:18908] Signal: Segmentation fault (11)
250
[gpu18:18908] Signal code: Address not mapped (1)
251
[gpu18:18908] Failing at address: (nil)
252
[gpu18:18908] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fe03287ff20]
253
[gpu18:18908] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fe02bb2ff14]
254
[gpu18:18908] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fe02aa1e924]
255
[gpu18:18908] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fe02aa2256e]
256
[gpu18:18908] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fe02acb605d]
257
[gpu18:18908] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fe02910561f]
258
[gpu18:18908] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fe02ac7a376]
259
[gpu18:18908] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fe033220238]
260
[gpu18:18908] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fe03324e715]
261
[gpu18:18908] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fe0336a5305]
262
[gpu18:18908] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fe033ae1329]
263
[gpu18:18908] [11] gmx_mpi(+0x60b2)[0x55db0e6b70b2]
264
[gpu18:18908] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fe032862b97]
265
[gpu18:18908] [13] gmx_mpi(+0x61ea)[0x55db0e6b71ea]
266
[gpu18:18908] *** End of error message ***
267
[gpu18:18912] *** Process received signal ***
268
[gpu18:18912] Signal: Segmentation fault (11)
269
[gpu18:18912] Signal code: Address not mapped (1)
270
[gpu18:18912] Failing at address: (nil)
271
[gpu18:18912] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f75322f5f20]
272
[gpu18:18912] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f752b5a5f14]
273
[gpu18:18912] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f752a494924]
274
[gpu18:18912] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f752a49856e]
275
[gpu18:18912] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f752a72c05d]
276
[gpu18:18912] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f7528b7b61f]
277
[gpu18:18912] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f752a6f0376]
278
[gpu18:18912] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f7532c96238]
279
[gpu18:18912] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f7532cc4715]
280
[gpu18:18912] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f753311b305]
281
[gpu18:18912] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f7533557329]
282
[gpu18:18912] [11] gmx_mpi(+0x60b2)[0x55d5e39c70b2]
283
[gpu18:18912] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f75322d8b97]
284
[gpu18:18912] [13] gmx_mpi(+0x61ea)[0x55d5e39c71ea]
285
[gpu18:18912] *** End of error message ***
286
[gpu18:18910] *** Process received signal ***
287
[gpu18:18910] Signal: Segmentation fault (11)
288
[gpu18:18910] Signal code: Address not mapped (1)
289
[gpu18:18910] Failing at address: (nil)
290
[gpu18:18910] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f64d75acf20]
291
[gpu18:18910] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f64d085cf14]
292
[gpu18:18910] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f64cf74b924]
293
[gpu18:18910] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f64cf74f56e]
294
[gpu18:18910] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f64cf9e305d]
295
[gpu18:18910] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f64cde3261f]
296
[gpu18:18910] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f64cf9a7376]
297
[gpu18:18910] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f64d7f4d238]
298
[gpu18:18910] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f64d7f7b715]
299
[gpu18:18910] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f64d83d2305]
300
[gpu18:18910] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f64d880e329]
301
[gpu18:18910] [11] gmx_mpi(+0x60b2)[0x55bef70350b2]
302
[gpu18:18910] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f64d758fb97]
303
[gpu18:18910] [13] gmx_mpi(+0x61ea)[0x55bef70351ea]
304
[gpu18:18910] *** End of error message ***
305
[gpu18:18911] *** Process received signal ***
306
[gpu18:18911] Signal: Segmentation fault (11)
307
[gpu18:18911] Signal code: Address not mapped (1)
308
[gpu18:18911] Failing at address: (nil)
309
[gpu18:18911] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f54b3880f20]
310
[gpu18:18911] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f54acb30f14]
311
[gpu18:18911] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f54aba1f924]
312
[gpu18:18911] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f54aba2356e]
313
[gpu18:18911] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f54abcb705d]
314
[gpu18:18911] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f54aa10661f]
315
[gpu18:18911] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f54abc7b376]
316
[gpu18:18911] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f54b4221238]
317
[gpu18:18911] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f54b424f715]
318
[gpu18:18911] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f54b46a6305]
319
[gpu18:18911] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f54b4ae2329]
320
[gpu18:18911] [11] gmx_mpi(+0x60b2)[0x5599041d10b2]
321
[gpu18:18911] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f54b3863b97]
322
[gpu18:18911] [13] gmx_mpi(+0x61ea)[0x5599041d11ea]
323
[gpu18:18911] *** End of error message ***
324
[gpu18:18914] *** Process received signal ***
325
[gpu18:18914] Signal: Segmentation fault (11)
326
[gpu18:18914] Signal code: Address not mapped (1)
327
[gpu18:18914] Failing at address: (nil)
328
[gpu18:18914] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f25b6445f20]
329
[gpu18:18914] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f25af6f5f14]
330
[gpu18:18914] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f25ae5e4924]
331
[gpu18:18914] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f25ae5e856e]
332
[gpu18:18914] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f25ae87c05d]
333
[gpu18:18914] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f25acccb61f]
334
[gpu18:18914] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f25ae840376]
335
[gpu18:18914] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f25b6de6238]
336
[gpu18:18914] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f25b6e14715]
337
[gpu18:18914] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f25b726b305]
338
[gpu18:18914] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f25b76a7329]
339
[gpu18:18914] [11] gmx_mpi(+0x60b2)[0x564d13aac0b2]
340
[gpu18:18914] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f25b6428b97]
341
[gpu18:18914] [13] gmx_mpi(+0x61ea)[0x564d13aac1ea]
342
[gpu18:18914] *** End of error message ***
343
[gpu18:18913] *** Process received signal ***
344
[gpu18:18913] Signal: Segmentation fault (11)
345
[gpu18:18913] Signal code: Address not mapped (1)
346
[gpu18:18913] Failing at address: (nil)
347
[gpu18:18913] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f2409777f20]
348
[gpu18:18913] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f2402a27f14]
349
[gpu18:18913] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f2401916924]
350
[gpu18:18913] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f240191a56e]
351
[gpu18:18913] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f2401bae05d]
352
[gpu18:18913] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f23ffffd61f]
353
[gpu18:18913] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f2401b72376]
354
[gpu18:18913] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f240a118238]
355
[gpu18:18913] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f240a146715]
356
[gpu18:18913] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f240a59d305]
357
[gpu18:18913] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f240a9d9329]
358
[gpu18:18913] [11] gmx_mpi(+0x60b2)[0x559e7457d0b2]
359
[gpu18:18913] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f240975ab97]
360
[gpu18:18913] [13] gmx_mpi(+0x61ea)[0x559e7457d1ea]
361
[gpu18:18913] *** End of error message ***
362
[gpu18:18915] *** Process received signal ***
363
[gpu18:18915] Signal: Segmentation fault (11)
364
[gpu18:18915] Signal code: Address not mapped (1)
365
[gpu18:18915] Failing at address: (nil)
366
[gpu18:18915] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f3d77f80f20]
367
[gpu18:18915] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f3d71230f14]
368
[gpu18:18915] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f3d7011f924]
369
[gpu18:18915] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f3d7012356e]
370
[gpu18:18915] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f3d703b705d]
371
[gpu18:18915] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f3d6e80661f]
372
[gpu18:18915] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f3d7037b376]
373
[gpu18:18915] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f3d78921238]
374
[gpu18:18915] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f3d7894f715]
375
[gpu18:18915] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f3d78da6305]
376
[gpu18:18915] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f3d791e2329]
377
[gpu18:18915] [11] gmx_mpi(+0x60b2)[0x5617292250b2]
378
[gpu18:18915] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f3d77f63b97]
379
[gpu18:18915] [13] gmx_mpi(+0x61ea)[0x5617292251ea]
380
[gpu18:18915] *** End of error message ***
381
[gpu18:18917] *** Process received signal ***
382
[gpu18:18917] Signal: Segmentation fault (11)
383
[gpu18:18917] Signal code: Address not mapped (1)
384
[gpu18:18917] Failing at address: (nil)
385
[gpu18:18917] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f999a37bf20]
386
[gpu18:18917] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f999362bf14]
387
[gpu18:18917] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f999251a924]
388
[gpu18:18917] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f999251e56e]
389
[gpu18:18917] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f99927b205d]
390
[gpu18:18917] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f9990c0161f]
391
[gpu18:18917] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f9992776376]
392
[gpu18:18917] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f999ad1c238]
393
[gpu18:18917] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f999ad4a715]
394
[gpu18:18917] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f999b1a1305]
395
[gpu18:18917] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f999b5dd329]
396
[gpu18:18917] [11] gmx_mpi(+0x60b2)[0x557b0d16a0b2]
397
[gpu18:18917] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f999a35eb97]
398
[gpu18:18917] [13] gmx_mpi(+0x61ea)[0x557b0d16a1ea]
399
[gpu18:18917] *** End of error message ***
400
[gpu18:18916] *** Process received signal ***
401
[gpu18:18916] Signal: Segmentation fault (11)
402
[gpu18:18916] Signal code: Address not mapped (1)
403
[gpu18:18916] Failing at address: (nil)
404
[gpu18:18916] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f4cad17df20]
405
[gpu18:18916] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f4ca642df14]
406
[gpu18:18916] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f4ca531c924]
407
[gpu18:18916] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f4ca532056e]
408
[gpu18:18916] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f4ca55b405d]
409
[gpu18:18916] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f4ca3a0361f]
410
[gpu18:18916] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f4ca5578376]
411
[gpu18:18916] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f4cadb1e238]
412
[gpu18:18916] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f4cadb4c715]
413
[gpu18:18916] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f4cadfa3305]
414
[gpu18:18916] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f4cae3df329]
415
[gpu18:18916] [11] gmx_mpi(+0x60b2)[0x55cbf4b8b0b2]
416
[gpu18:18916] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f4cad160b97]
417
[gpu18:18916] [13] gmx_mpi(+0x61ea)[0x55cbf4b8b1ea]
418
[gpu18:18916] *** End of error message ***
419
[gpu18:18918] *** Process received signal ***
420
[gpu18:18918] Signal: Segmentation fault (11)
421
[gpu18:18918] Signal code: Address not mapped (1)
422
[gpu18:18918] Failing at address: (nil)
423
[gpu18:18918] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f80376edf20]
424
[gpu18:18918] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f803099df14]
425
[gpu18:18918] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f802f88c924]
426
[gpu18:18918] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f802f89056e]
427
[gpu18:18918] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f802fb2405d]
428
[gpu18:18918] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f802df7361f]
429
[gpu18:18918] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f802fae8376]
430
[gpu18:18918] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f803808e238]
431
[gpu18:18918] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f80380bc715]
432
[gpu18:18918] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f8038513305]
433
[gpu18:18918] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f803894f329]
434
[gpu18:18918] [11] gmx_mpi(+0x60b2)[0x55d430cc10b2]
435
[gpu18:18918] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f80376d0b97]
436
[gpu18:18918] [13] gmx_mpi(+0x61ea)[0x55d430cc11ea]
437
[gpu18:18918] *** End of error message ***
438
[gpu20:18616] *** Process received signal ***
439
[gpu20:18616] Signal: Segmentation fault (11)
440
[gpu20:18616] Signal code: Address not mapped (1)
441
[gpu20:18616] Failing at address: (nil)
442
[gpu20:18616] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f0453da8f20]
443
[gpu20:18616] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f044d058f14]
444
[gpu20:18616] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f044bf47924]
445
[gpu20:18616] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f044bf4b56e]
446
[gpu20:18616] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f044c1df05d]
447
[gpu20:18616] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f044a62e61f]
448
[gpu20:18616] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f044c1a3376]
449
[gpu20:18616] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f0454749238]
450
[gpu20:18616] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f0454777715]
451
[gpu20:18616] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f0454bce305]
452
[gpu20:18616] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f045500a329]
453
[gpu20:18616] [11] gmx_mpi(+0x60b2)[0x562450e3c0b2]
454
[gpu20:18616] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f0453d8bb97]
455
[gpu20:18616] [13] gmx_mpi(+0x61ea)[0x562450e3c1ea]
456
[gpu20:18616] *** End of error message ***
457
[gpu18:18919] *** Process received signal ***
458
[gpu18:18919] Signal: Segmentation fault (11)
459
[gpu18:18919] Signal code: Address not mapped (1)
460
[gpu18:18919] Failing at address: (nil)
461
[gpu18:18919] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fa258a0df20]
462
[gpu18:18919] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fa251cbdf14]
463
[gpu18:18919] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fa250bac924]
464
[gpu18:18919] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fa250bb056e]
465
[gpu18:18919] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fa250e4405d]
466
[gpu18:18919] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fa24f29361f]
467
[gpu18:18919] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fa250e08376]
468
[gpu18:18919] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fa2593ae238]
469
[gpu18:18919] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fa2593dc715]
470
[gpu18:18919] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fa259833305]
471
[gpu18:18919] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fa259c6f329]
472
[gpu18:18919] [11] gmx_mpi(+0x60b2)[0x557842b550b2]
473
[gpu18:18919] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fa2589f0b97]
474
[gpu18:18919] [13] gmx_mpi(+0x61ea)[0x557842b551ea]
475
[gpu18:18919] *** End of error message ***
476
[gpu18:18923] *** Process received signal ***
477
[gpu18:18923] Signal: Segmentation fault (11)
478
[gpu18:18923] Signal code: Address not mapped (1)
479
[gpu18:18923] Failing at address: (nil)
480
[gpu18:18923] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f2e0c73af20]
481
[gpu18:18923] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f2e059eaf14]
482
[gpu18:18923] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f2e048d9924]
483
[gpu18:18923] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f2e048dd56e]
484
[gpu18:18923] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f2e04b7105d]
485
[gpu18:18923] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f2e02fc061f]
486
[gpu18:18923] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f2e04b35376]
487
[gpu18:18923] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f2e0d0db238]
488
[gpu18:18923] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f2e0d109715]
489
[gpu18:18923] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f2e0d560305]
490
[gpu18:18923] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f2e0d99c329]
491
[gpu18:18923] [11] gmx_mpi(+0x60b2)[0x55a1767920b2]
492
[gpu18:18923] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f2e0c71db97]
493
[gpu18:18923] [13] gmx_mpi(+0x61ea)[0x55a1767921ea]
494
[gpu18:18923] *** End of error message ***
495
[gpu18:18926] *** Process received signal ***
496
[gpu18:18926] Signal: Segmentation fault (11)
497
[gpu18:18926] Signal code: Address not mapped (1)
498
[gpu18:18926] Failing at address: (nil)
499
[gpu18:18926] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f6cbecc1f20]
500
[gpu18:18926] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f6cb7f71f14]
501
[gpu18:18926] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f6cb6e60924]
502
[gpu18:18926] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f6cb6e6456e]
503
[gpu18:18926] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f6cb70f805d]
504
[gpu18:18926] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f6cb554761f]
505
[gpu18:18926] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f6cb70bc376]
506
[gpu18:18926] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f6cbf662238]
507
[gpu18:18926] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f6cbf690715]
508
[gpu18:18926] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f6cbfae7305]
509
[gpu18:18926] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f6cbff23329]
510
[gpu18:18926] [11] gmx_mpi(+0x60b2)[0x557484cfd0b2]
511
[gpu18:18926] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f6cbeca4b97]
512
[gpu18:18926] [13] gmx_mpi(+0x61ea)[0x557484cfd1ea]
513
[gpu18:18926] *** End of error message ***
514
[gpu18:18931] *** Process received signal ***
515
[gpu18:18931] Signal: Segmentation fault (11)
516
[gpu18:18931] Signal code: Address not mapped (1)
517
[gpu18:18931] Failing at address: (nil)
518
[gpu18:18931] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fc776103f20]
519
[gpu18:18931] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fc76f3b3f14]
520
[gpu18:18931] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fc76e2a2924]
521
[gpu18:18931] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fc76e2a656e]
522
[gpu18:18931] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fc76e53a05d]
523
[gpu18:18931] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fc76c98961f]
524
[gpu18:18931] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fc76e4fe376]
525
[gpu18:18931] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fc776aa4238]
526
[gpu18:18931] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fc776ad2715]
527
[gpu18:18931] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fc776f29305]
528
[gpu18:18931] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fc777365329]
529
[gpu18:18931] [11] gmx_mpi(+0x60b2)[0x5576a981f0b2]
530
[gpu18:18931] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fc7760e6b97]
531
[gpu18:18931] [13] gmx_mpi(+0x61ea)[0x5576a981f1ea]
532
[gpu18:18931] *** End of error message ***
533
[gpu18:18933] *** Process received signal ***
534
[gpu18:18933] Signal: Segmentation fault (11)
535
[gpu18:18933] Signal code: Address not mapped (1)
536
[gpu18:18933] Failing at address: (nil)
537
[gpu18:18933] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f67c45abf20]
538
[gpu18:18933] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f67bd85bf14]
539
[gpu18:18933] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f67bc74a924]
540
[gpu18:18933] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f67bc74e56e]
541
[gpu18:18933] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f67bc9e205d]
542
[gpu18:18933] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f67bae3161f]
543
[gpu18:18933] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f67bc9a6376]
544
[gpu18:18933] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f67c4f4c238]
545
[gpu18:18933] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f67c4f7a715]
546
[gpu18:18933] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f67c53d1305]
547
[gpu18:18933] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f67c580d329]
548
[gpu18:18933] [11] gmx_mpi(+0x60b2)[0x55fbafeb60b2]
549
[gpu18:18933] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f67c458eb97]
550
[gpu18:18933] [13] gmx_mpi(+0x61ea)[0x55fbafeb61ea]
551
[gpu18:18933] *** End of error message ***
552
[gpu18:18920] *** Process received signal ***
553
[gpu18:18920] Signal: Segmentation fault (11)
554
[gpu18:18920] Signal code: Address not mapped (1)
555
[gpu18:18920] Failing at address: (nil)
556
[gpu18:18920] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f0691610f20]
557
[gpu18:18920] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f068a8c0f14]
558
[gpu18:18920] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f06897af924]
559
[gpu18:18920] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f06897b356e]
560
[gpu18:18920] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f0689a4705d]
561
[gpu18:18920] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f0687e9661f]
562
[gpu18:18920] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f0689a0b376]
563
[gpu18:18920] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f0691fb1238]
564
[gpu18:18920] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f0691fdf715]
565
[gpu18:18920] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f0692436305]
566
[gpu18:18920] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f0692872329]
567
[gpu18:18920] [11] gmx_mpi(+0x60b2)[0x56024e31c0b2]
568
[gpu18:18920] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f06915f3b97]
569
[gpu18:18920] [13] gmx_mpi(+0x61ea)[0x56024e31c1ea]
570
[gpu18:18920] *** End of error message ***
571
[gpu18:18921] *** Process received signal ***
572
[gpu18:18921] Signal: Segmentation fault (11)
573
[gpu18:18921] Signal code: Address not mapped (1)
574
[gpu18:18921] Failing at address: (nil)
575
[gpu18:18921] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f15f16baf20]
576
[gpu18:18921] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f15ea96af14]
577
[gpu18:18921] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f15e9859924]
578
[gpu18:18921] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f15e985d56e]
579
[gpu18:18921] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f15e9af105d]
580
[gpu18:18921] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f15e7f4061f]
581
[gpu18:18921] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f15e9ab5376]
582
[gpu18:18921] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f15f205b238]
583
[gpu18:18921] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f15f2089715]
584
[gpu18:18921] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f15f24e0305]
585
[gpu18:18921] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f15f291c329]
586
[gpu18:18921] [11] gmx_mpi(+0x60b2)[0x558177e4c0b2]
587
[gpu18:18921] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f15f169db97]
588
[gpu18:18921] [13] gmx_mpi(+0x61ea)[0x558177e4c1ea]
589
[gpu18:18921] *** End of error message ***
590
[gpu18:18922] *** Process received signal ***
591
[gpu18:18922] Signal: Segmentation fault (11)
592
[gpu18:18922] Signal code: Address not mapped (1)
593
[gpu18:18922] Failing at address: (nil)
594
[gpu18:18922] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fcbf1e28f20]
595
[gpu18:18922] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fcbeb0d8f14]
596
[gpu18:18922] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fcbe9fc7924]
597
[gpu18:18922] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fcbe9fcb56e]
598
[gpu18:18922] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fcbea25f05d]
599
[gpu18:18922] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fcbe86ae61f]
600
[gpu18:18922] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fcbea223376]
601
[gpu18:18922] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fcbf27c9238]
602
[gpu18:18922] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fcbf27f7715]
603
[gpu18:18922] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fcbf2c4e305]
604
[gpu18:18922] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fcbf308a329]
605
[gpu18:18922] [11] gmx_mpi(+0x60b2)[0x55b3e42b40b2]
606
[gpu18:18922] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fcbf1e0bb97]
607
[gpu18:18922] [13] gmx_mpi(+0x61ea)[0x55b3e42b41ea]
608
[gpu18:18922] *** End of error message ***
609
[gpu18:18938] *** Process received signal ***
610
[gpu18:18938] Signal: Segmentation fault (11)
611
[gpu18:18938] Signal code: Address not mapped (1)
612
[gpu18:18938] Failing at address: (nil)
613
[gpu18:18938] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f657fef2f20]
614
[gpu18:18938] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f65791a2f14]
615
[gpu18:18938] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f6578091924]
616
[gpu18:18938] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f657809556e]
617
[gpu18:18938] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f657832905d]
618
[gpu18:18938] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f657677861f]
619
[gpu18:18938] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f65782ed376]
620
[gpu18:18938] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f6580893238]
621
[gpu18:18938] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f65808c1715]
622
[gpu18:18938] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f6580d18305]
623
[gpu18:18938] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f6581154329]
624
[gpu18:18938] [11] gmx_mpi(+0x60b2)[0x5611615f90b2]
625
[gpu18:18938] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f657fed5b97]
626
[gpu18:18938] [13] gmx_mpi(+0x61ea)[0x5611615f91ea]
627
[gpu18:18938] *** End of error message ***
628
[gpu19:18625] *** Process received signal ***
629
[gpu19:18625] Signal: Segmentation fault (11)
630
[gpu19:18625] Signal code: Address not mapped (1)
631
[gpu19:18625] Failing at address: (nil)
632
[gpu19:18625] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fa399b36f20]
633
[gpu19:18625] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fa392de6f14]
634
[gpu19:18625] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fa391cd5924]
635
[gpu19:18625] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fa391cd956e]
636
[gpu19:18625] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fa391f6d05d]
637
[gpu19:18625] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fa3903bc61f]
638
[gpu19:18625] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fa391f31376]
639
[gpu19:18625] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fa39a4d7238]
640
[gpu19:18625] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fa39a505715]
641
[gpu19:18625] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fa39a95c305]
642
[gpu19:18625] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fa39ad98329]
643
[gpu19:18625] [11] gmx_mpi(+0x60b2)[0x564403de90b2]
644
[gpu19:18625] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fa399b19b97]
645
[gpu19:18625] [13] gmx_mpi(+0x61ea)[0x564403de91ea]
646
[gpu19:18625] *** End of error message ***
647
[gpu19:18626] *** Process received signal ***
648
[gpu19:18626] Signal: Segmentation fault (11)
649
[gpu19:18626] Signal code: Address not mapped (1)
650
[gpu19:18626] Failing at address: (nil)
651
[gpu19:18626] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f574421df20]
652
[gpu19:18626] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f573d4cdf14]
653
[gpu19:18626] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f573c3bc924]
654
[gpu19:18626] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f573c3c056e]
655
[gpu19:18626] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f573c65405d]
656
[gpu19:18626] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f573aaa361f]
657
[gpu19:18626] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f573c618376]
658
[gpu19:18626] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f5744bbe238]
659
[gpu19:18626] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f5744bec715]
660
[gpu19:18626] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f5745043305]
661
[gpu19:18626] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f574547f329]
662
[gpu19:18626] [11] gmx_mpi(+0x60b2)[0x55f94a0500b2]
663
[gpu19:18626] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f5744200b97]
664
[gpu19:18626] [13] gmx_mpi(+0x61ea)[0x55f94a0501ea]
665
[gpu19:18626] *** End of error message ***
666
[gpu19:18627] *** Process received signal ***
667
[gpu19:18627] Signal: Segmentation fault (11)
668
[gpu19:18627] Signal code: Address not mapped (1)
669
[gpu19:18627] Failing at address: (nil)
670
[gpu19:18627] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f76a71cbf20]
671
[gpu19:18627] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f76a047bf14]
672
[gpu19:18627] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f769f36a924]
673
[gpu19:18627] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f769f36e56e]
674
[gpu19:18627] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f769f60205d]
675
[gpu19:18627] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f769da5161f]
676
[gpu19:18627] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f769f5c6376]
677
[gpu19:18627] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f76a7b6c238]
678
[gpu19:18627] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f76a7b9a715]
679
[gpu19:18627] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f76a7ff1305]
680
[gpu19:18627] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f76a842d329]
681
[gpu19:18627] [11] gmx_mpi(+0x60b2)[0x555f9470a0b2]
682
[gpu19:18627] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f76a71aeb97]
683
[gpu19:18627] [13] gmx_mpi(+0x61ea)[0x555f9470a1ea]
684
[gpu19:18627] *** End of error message ***
685
[gpu19:18628] *** Process received signal ***
686
[gpu19:18628] Signal: Segmentation fault (11)
687
[gpu19:18628] Signal code: Address not mapped (1)
688
[gpu19:18628] Failing at address: (nil)
689
[gpu19:18628] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f342d1d1f20]
690
[gpu19:18628] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f3426481f14]
691
[gpu19:18628] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f3425370924]
692
[gpu19:18628] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f342537456e]
693
[gpu19:18628] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f342560805d]
694
[gpu19:18628] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f3423a5761f]
695
[gpu19:18628] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f34255cc376]
696
[gpu19:18628] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f342db72238]
697
[gpu19:18628] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f342dba0715]
698
[gpu19:18628] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f342dff7305]
699
[gpu19:18628] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f342e433329]
700
[gpu19:18628] [11] gmx_mpi(+0x60b2)[0x55fb48e7d0b2]
701
[gpu19:18628] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f342d1b4b97]
702
[gpu19:18628] [13] gmx_mpi(+0x61ea)[0x55fb48e7d1ea]
703
[gpu19:18628] *** End of error message ***
704
[gpu19:18632] *** Process received signal ***
705
[gpu19:18632] Signal: Segmentation fault (11)
706
[gpu19:18632] Signal code: Address not mapped (1)
707
[gpu19:18632] Failing at address: (nil)
708
[gpu19:18632] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fbef6e50f20]
709
[gpu19:18632] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fbef0100f14]
710
[gpu19:18632] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fbeeefef924]
711
[gpu19:18632] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fbeeeff356e]
712
[gpu19:18632] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fbeef28705d]
713
[gpu19:18632] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fbeed6d661f]
714
[gpu19:18632] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fbeef24b376]
715
[gpu19:18632] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fbef77f1238]
716
[gpu19:18632] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fbef781f715]
717
[gpu19:18632] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fbef7c76305]
718
[gpu19:18632] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fbef80b2329]
719
[gpu19:18632] [11] gmx_mpi(+0x60b2)[0x55dfb839f0b2]
720
[gpu19:18632] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fbef6e33b97]
721
[gpu19:18632] [13] gmx_mpi(+0x61ea)[0x55dfb839f1ea]
722
[gpu19:18632] *** End of error message ***
723
[gpu19:18630] *** Process received signal ***
724
[gpu19:18630] Signal: Segmentation fault (11)
725
[gpu19:18630] Signal code: Address not mapped (1)
726
[gpu19:18630] Failing at address: (nil)
727
[gpu19:18630] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f78799f9f20]
728
[gpu19:18630] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f7872ca9f14]
729
[gpu19:18630] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f7871b98924]
730
[gpu19:18630] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f7871b9c56e]
731
[gpu19:18630] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f7871e3005d]
732
[gpu19:18630] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f787027f61f]
733
[gpu19:18630] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f7871df4376]
734
[gpu19:18630] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f787a39a238]
735
[gpu19:18630] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f787a3c8715]
736
[gpu19:18630] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f787a81f305]
737
[gpu19:18630] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f787ac5b329]
738
[gpu19:18630] [11] gmx_mpi(+0x60b2)[0x559d1644a0b2]
739
[gpu19:18630] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f78799dcb97]
740
[gpu19:18630] [13] gmx_mpi(+0x61ea)[0x559d1644a1ea]
741
[gpu19:18630] *** End of error message ***
742
[gpu19:18629] *** Process received signal ***
743
[gpu19:18629] Signal: Segmentation fault (11)
744
[gpu19:18629] Signal code: Address not mapped (1)
745
[gpu19:18629] Failing at address: (nil)
746
[gpu19:18629] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f57bc799f20]
747
[gpu19:18629] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f57b5a49f14]
748
[gpu19:18629] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f57b4938924]
749
[gpu19:18629] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f57b493c56e]
750
[gpu19:18629] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f57b4bd005d]
751
[gpu19:18629] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f57b301f61f]
752
[gpu19:18629] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f57b4b94376]
753
[gpu19:18629] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f57bd13a238]
754
[gpu19:18629] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f57bd168715]
755
[gpu19:18629] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f57bd5bf305]
756
[gpu19:18629] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f57bd9fb329]
757
[gpu19:18629] [11] gmx_mpi(+0x60b2)[0x5570f83460b2]
758
[gpu19:18629] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f57bc77cb97]
759
[gpu19:18629] [13] gmx_mpi(+0x61ea)[0x5570f83461ea]
760
[gpu19:18629] *** End of error message ***
761
[gpu19:18631] *** Process received signal ***
762
[gpu19:18631] Signal: Segmentation fault (11)
763
[gpu19:18631] Signal code: Address not mapped (1)
764
[gpu19:18631] Failing at address: (nil)
765
[gpu19:18631] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f8fb5c04f20]
766
[gpu19:18631] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f8faeeb4f14]
767
[gpu19:18631] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f8fadda3924]
768
[gpu19:18631] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f8fadda756e]
769
[gpu19:18631] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f8fae03b05d]
770
[gpu19:18631] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f8fac48a61f]
771
[gpu19:18631] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f8fadfff376]
772
[gpu19:18631] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f8fb65a5238]
773
[gpu19:18631] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f8fb65d3715]
774
[gpu19:18631] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f8fb6a2a305]
775
[gpu19:18631] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f8fb6e66329]
776
[gpu19:18631] [11] gmx_mpi(+0x60b2)[0x557f453b90b2]
777
[gpu19:18631] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f8fb5be7b97]
778
[gpu19:18631] [13] gmx_mpi(+0x61ea)[0x557f453b91ea]
779
[gpu19:18631] *** End of error message ***
780
[gpu19:18636] *** Process received signal ***
781
[gpu19:18636] Signal: Segmentation fault (11)
782
[gpu19:18636] Signal code: Address not mapped (1)
783
[gpu19:18636] Failing at address: (nil)
784
[gpu19:18636] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f9459720f20]
785
[gpu19:18636] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f94529d0f14]
786
[gpu19:18636] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f94518bf924]
787
[gpu19:18636] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f94518c356e]
788
[gpu19:18636] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f9451b5705d]
789
[gpu19:18636] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f944ffa661f]
790
[gpu19:18636] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f9451b1b376]
791
[gpu19:18636] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f945a0c1238]
792
[gpu19:18636] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f945a0ef715]
793
[gpu19:18636] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f945a546305]
794
[gpu19:18636] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f945a982329]
795
[gpu19:18636] [11] gmx_mpi(+0x60b2)[0x55b7d186c0b2]
796
[gpu19:18636] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f9459703b97]
797
[gpu19:18636] [13] gmx_mpi(+0x61ea)[0x55b7d186c1ea]
798
[gpu19:18636] *** End of error message ***
799
[gpu19:18633] *** Process received signal ***
800
[gpu19:18633] Signal: Segmentation fault (11)
801
[gpu19:18633] Signal code: Address not mapped (1)
802
[gpu19:18633] Failing at address: (nil)
803
[gpu19:18633] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f2143790f20]
804
[gpu19:18633] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f213ca40f14]
805
[gpu19:18633] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f213b92f924]
806
[gpu19:18633] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f213b93356e]
807
[gpu19:18633] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f213bbc705d]
808
[gpu19:18633] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f213a01661f]
809
[gpu19:18633] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f213bb8b376]
810
[gpu19:18633] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f2144131238]
811
[gpu19:18633] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f214415f715]
812
[gpu19:18633] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f21445b6305]
813
[gpu19:18633] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f21449f2329]
814
[gpu19:18633] [11] gmx_mpi(+0x60b2)[0x561a11c100b2]
815
[gpu19:18633] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f2143773b97]
816
[gpu19:18633] [13] gmx_mpi(+0x61ea)[0x561a11c101ea]
817
[gpu19:18633] *** End of error message ***
818
[gpu19:18634] *** Process received signal ***
819
[gpu19:18634] Signal: Segmentation fault (11)
820
[gpu19:18634] Signal code: Address not mapped (1)
821
[gpu19:18634] Failing at address: (nil)
822
[gpu19:18634] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f61caf35f20]
823
[gpu19:18634] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f61c41e5f14]
824
[gpu19:18634] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f61c30d4924]
825
[gpu19:18634] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f61c30d856e]
826
[gpu19:18634] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f61c336c05d]
827
[gpu19:18634] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f61c17bb61f]
828
[gpu19:18634] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f61c3330376]
829
[gpu19:18634] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f61cb8d6238]
830
[gpu19:18634] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f61cb904715]
831
[gpu19:18634] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f61cbd5b305]
832
[gpu19:18634] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f61cc197329]
833
[gpu19:18634] [11] gmx_mpi(+0x60b2)[0x562ee4e420b2]
834
[gpu19:18634] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f61caf18b97]
835
[gpu19:18634] [13] gmx_mpi(+0x61ea)[0x562ee4e421ea]
836
[gpu19:18634] *** End of error message ***
837
[gpu19:18635] *** Process received signal ***
838
[gpu19:18635] Signal: Segmentation fault (11)
839
[gpu19:18635] Signal code: Address not mapped (1)
840
[gpu19:18635] Failing at address: (nil)
841
[gpu19:18635] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f6e10c28f20]
842
[gpu19:18635] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f6e09ed8f14]
843
[gpu19:18635] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f6e08dc7924]
844
[gpu19:18635] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f6e08dcb56e]
845
[gpu19:18635] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f6e0905f05d]
846
[gpu19:18635] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f6e074ae61f]
847
[gpu19:18635] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f6e09023376]
848
[gpu19:18635] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f6e115c9238]
849
[gpu19:18635] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f6e115f7715]
850
[gpu19:18635] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f6e11a4e305]
851
[gpu19:18635] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f6e11e8a329]
852
[gpu19:18635] [11] gmx_mpi(+0x60b2)[0x55af65ad90b2]
853
[gpu19:18635] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f6e10c0bb97]
854
[gpu19:18635] [13] gmx_mpi(+0x61ea)[0x55af65ad91ea]
855
[gpu19:18635] *** End of error message ***
856
[gpu19:18639] *** Process received signal ***
857
[gpu19:18639] Signal: Segmentation fault (11)
858
[gpu19:18639] Signal code: Address not mapped (1)
859
[gpu19:18639] Failing at address: (nil)
860
[gpu19:18639] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fac150a2f20]
861
[gpu19:18639] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fac0e352f14]
862
[gpu19:18639] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fac0d241924]
863
[gpu19:18639] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fac0d24556e]
864
[gpu19:18639] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fac0d4d905d]
865
[gpu19:18639] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fac0b92861f]
866
[gpu19:18639] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fac0d49d376]
867
[gpu19:18639] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fac15a43238]
868
[gpu19:18639] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fac15a71715]
869
[gpu19:18639] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fac15ec8305]
870
[gpu19:18639] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fac16304329]
871
[gpu19:18639] [11] gmx_mpi(+0x60b2)[0x559628ecd0b2]
872
[gpu19:18639] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fac15085b97]
873
[gpu19:18639] [13] gmx_mpi(+0x61ea)[0x559628ecd1ea]
874
[gpu19:18639] *** End of error message ***
875
[gpu19:18637] *** Process received signal ***
876
[gpu19:18637] Signal: Segmentation fault (11)
877
[gpu19:18637] Signal code: Address not mapped (1)
878
[gpu19:18637] Failing at address: (nil)
879
[gpu19:18637] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fec672e8f20]
880
[gpu19:18637] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fec60598f14]
881
[gpu19:18637] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fec5f487924]
882
[gpu19:18637] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fec5f48b56e]
883
[gpu19:18637] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fec5f71f05d]
884
[gpu19:18637] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fec5db6e61f]
885
[gpu19:18637] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fec5f6e3376]
886
[gpu19:18637] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fec67c89238]
887
[gpu19:18637] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fec67cb7715]
888
[gpu19:18637] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fec6810e305]
889
[gpu19:18637] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fec6854a329]
890
[gpu19:18637] [11] gmx_mpi(+0x60b2)[0x5635e44550b2]
891
[gpu19:18637] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fec672cbb97]
892
[gpu19:18637] [13] gmx_mpi(+0x61ea)[0x5635e44551ea]
893
[gpu19:18637] *** End of error message ***
894
[gpu19:18638] *** Process received signal ***
895
[gpu19:18638] Signal: Segmentation fault (11)
896
[gpu19:18638] Signal code: Address not mapped (1)
897
[gpu19:18638] Failing at address: (nil)
898
[gpu19:18638] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7faf1f770f20]
899
[gpu19:18638] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7faf18a20f14]
900
[gpu19:18638] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7faf1790f924]
901
[gpu19:18638] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7faf1791356e]
902
[gpu19:18638] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7faf17ba705d]
903
[gpu19:18638] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7faf15ff661f]
904
[gpu19:18638] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7faf17b6b376]
905
[gpu19:18638] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7faf20111238]
906
[gpu19:18638] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7faf2013f715]
907
[gpu19:18638] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7faf20596305]
908
[gpu19:18638] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7faf209d2329]
909
[gpu19:18638] [11] gmx_mpi(+0x60b2)[0x562814fc10b2]
910
[gpu19:18638] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7faf1f753b97]
911
[gpu19:18638] [13] gmx_mpi(+0x61ea)[0x562814fc11ea]
912
[gpu19:18638] *** End of error message ***
913
[gpu19:18640] *** Process received signal ***
914
[gpu19:18640] Signal: Segmentation fault (11)
915
[gpu19:18640] Signal code: Address not mapped (1)
916
[gpu19:18640] Failing at address: (nil)
917
[gpu19:18640] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f3381fa9f20]
918
[gpu19:18640] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f337b259f14]
919
[gpu19:18640] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f337a148924]
920
[gpu19:18640] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f337a14c56e]
921
[gpu19:18640] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f337a3e005d]
922
[gpu19:18640] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f337882f61f]
923
[gpu19:18640] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f337a3a4376]
924
[gpu19:18640] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f338294a238]
925
[gpu19:18640] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f3382978715]
926
[gpu19:18640] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f3382dcf305]
927
[gpu19:18640] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f338320b329]
928
[gpu19:18640] [11] gmx_mpi(+0x60b2)[0x55b6ab4d20b2]
929
[gpu19:18640] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f3381f8cb97]
930
[gpu19:18640] [13] gmx_mpi(+0x61ea)[0x55b6ab4d21ea]
931
[gpu19:18640] *** End of error message ***
932
[gpu19:18643] *** Process received signal ***
933
[gpu19:18643] Signal: Segmentation fault (11)
934
[gpu19:18643] Signal code: Address not mapped (1)
935
[gpu19:18643] Failing at address: (nil)
936
[gpu19:18643] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fd89ca49f20]
937
[gpu19:18643] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fd895cf9f14]
938
[gpu19:18643] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fd894be8924]
939
[gpu19:18643] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fd894bec56e]
940
[gpu19:18643] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fd894e8005d]
941
[gpu19:18643] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fd8932cf61f]
942
[gpu19:18643] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fd894e44376]
943
[gpu19:18643] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fd89d3ea238]
944
[gpu19:18643] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fd89d418715]
945
[gpu19:18643] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fd89d86f305]
946
[gpu19:18643] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fd89dcab329]
947
[gpu19:18643] [11] gmx_mpi(+0x60b2)[0x5597f6cb40b2]
948
[gpu19:18643] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fd89ca2cb97]
949
[gpu19:18643] [13] gmx_mpi(+0x61ea)[0x5597f6cb41ea]
950
[gpu19:18643] *** End of error message ***
951
[gpu19:18641] *** Process received signal ***
952
[gpu19:18641] Signal: Segmentation fault (11)
953
[gpu19:18641] Signal code: Address not mapped (1)
954
[gpu19:18641] Failing at address: (nil)
955
[gpu19:18641] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fbee9e3ef20]
956
[gpu19:18641] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fbee30eef14]
957
[gpu19:18641] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fbee1fdd924]
958
[gpu19:18641] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fbee1fe156e]
959
[gpu19:18641] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fbee227505d]
960
[gpu19:18641] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fbee06c461f]
961
[gpu19:18641] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fbee2239376]
962
[gpu19:18641] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fbeea7df238]
963
[gpu19:18641] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fbeea80d715]
964
[gpu19:18641] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fbeeac64305]
965
[gpu19:18641] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fbeeb0a0329]
966
[gpu19:18641] [11] gmx_mpi(+0x60b2)[0x56253af150b2]
967
[gpu19:18641] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fbee9e21b97]
968
[gpu19:18641] [13] gmx_mpi(+0x61ea)[0x56253af151ea]
969
[gpu19:18641] *** End of error message ***
970
[gpu19:18642] *** Process received signal ***
971
[gpu19:18642] Signal: Segmentation fault (11)
972
[gpu19:18642] Signal code: Address not mapped (1)
973
[gpu19:18642] Failing at address: (nil)
974
[gpu19:18642] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fc1235dff20]
975
[gpu19:18642] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fc11c88ff14]
976
[gpu19:18642] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fc11b77e924]
977
[gpu19:18642] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fc11b78256e]
978
[gpu19:18642] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fc11ba1605d]
979
[gpu19:18642] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fc119e6561f]
980
[gpu19:18642] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fc11b9da376]
981
[gpu19:18642] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fc123f80238]
982
[gpu19:18642] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fc123fae715]
983
[gpu19:18642] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fc124405305]
984
[gpu19:18642] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fc124841329]
985
[gpu19:18642] [11] gmx_mpi(+0x60b2)[0x555b1a3350b2]
986
[gpu19:18642] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fc1235c2b97]
987
[gpu19:18642] [13] gmx_mpi(+0x61ea)[0x555b1a3351ea]
988
[gpu19:18642] *** End of error message ***
989
[gpu19:18644] *** Process received signal ***
990
[gpu19:18644] Signal: Segmentation fault (11)
991
[gpu19:18644] Signal code: Address not mapped (1)
992
[gpu19:18644] Failing at address: (nil)
993
[gpu19:18644] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f31a8116f20]
994
[gpu19:18644] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f31a13c6f14]
995
[gpu19:18644] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f31a02b5924]
996
[gpu19:18644] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f31a02b956e]
997
[gpu19:18644] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f31a054d05d]
998
[gpu19:18644] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f319e99c61f]
999
[gpu19:18644] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f31a0511376]
1000
[gpu19:18644] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f31a8ab7238]
1001
[gpu19:18644] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f31a8ae5715]
1002
[gpu19:18644] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f31a8f3c305]
1003
[gpu19:18644] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f31a9378329]
1004
[gpu19:18644] [11] gmx_mpi(+0x60b2)[0x5611dd99d0b2]
1005
[gpu19:18644] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f31a80f9b97]
1006
[gpu19:18644] [13] gmx_mpi(+0x61ea)[0x5611dd99d1ea]
1007
[gpu19:18644] *** End of error message ***
1008
[gpu19:18647] *** Process received signal ***
1009
[gpu19:18647] Signal: Segmentation fault (11)
1010
[gpu19:18647] Signal code: Address not mapped (1)
1011
[gpu19:18647] Failing at address: (nil)
1012
[gpu19:18647] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f1d171c1f20]
1013
[gpu19:18647] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f1d10471f14]
1014
[gpu19:18647] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f1d0f360924]
1015
[gpu19:18647] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f1d0f36456e]
1016
[gpu19:18647] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f1d0f5f805d]
1017
[gpu19:18647] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f1d0da4761f]
1018
[gpu19:18647] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f1d0f5bc376]
1019
[gpu19:18647] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f1d17b62238]
1020
[gpu19:18647] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f1d17b90715]
1021
[gpu19:18647] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f1d17fe7305]
1022
[gpu19:18647] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f1d18423329]
1023
[gpu19:18647] [11] gmx_mpi(+0x60b2)[0x56368bfad0b2]
1024
[gpu19:18647] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f1d171a4b97]
1025
[gpu19:18647] [13] gmx_mpi(+0x61ea)[0x56368bfad1ea]
1026
[gpu19:18647] *** End of error message ***
1027
[gpu19:18645] *** Process received signal ***
1028
[gpu19:18645] Signal: Segmentation fault (11)
1029
[gpu19:18645] Signal code: Address not mapped (1)
1030
[gpu19:18645] Failing at address: (nil)
1031
[gpu19:18645] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f91b85bbf20]
1032
[gpu19:18645] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f91b186bf14]
1033
[gpu19:18645] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f91b075a924]
1034
[gpu19:18645] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f91b075e56e]
1035
[gpu19:18645] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f91b09f205d]
1036
[gpu19:18645] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f91aee4161f]
1037
[gpu19:18645] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f91b09b6376]
1038
[gpu19:18645] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f91b8f5c238]
1039
[gpu19:18645] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f91b8f8a715]
1040
[gpu19:18645] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f91b93e1305]
1041
[gpu19:18645] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f91b981d329]
1042
[gpu19:18645] [11] gmx_mpi(+0x60b2)[0x55d3404480b2]
1043
[gpu19:18645] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f91b859eb97]
1044
[gpu19:18645] [13] gmx_mpi(+0x61ea)[0x55d3404481ea]
1045
[gpu19:18645] *** End of error message ***
1046
[gpu19:18646] *** Process received signal ***
1047
[gpu19:18646] Signal: Segmentation fault (11)
1048
[gpu19:18646] Signal code: Address not mapped (1)
1049
[gpu19:18646] Failing at address: (nil)
1050
[gpu19:18646] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f509b367f20]
1051
[gpu19:18646] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f5094617f14]
1052
[gpu19:18646] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f5093506924]
1053
[gpu19:18646] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f509350a56e]
1054
[gpu19:18646] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f509379e05d]
1055
[gpu19:18646] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f5091bed61f]
1056
[gpu19:18646] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f5093762376]
1057
[gpu19:18646] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f509bd08238]
1058
[gpu19:18646] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f509bd36715]
1059
[gpu19:18646] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f509c18d305]
1060
[gpu19:18646] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f509c5c9329]
1061
[gpu19:18646] [11] gmx_mpi(+0x60b2)[0x562cea8070b2]
1062
[gpu19:18646] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f509b34ab97]
1063
[gpu19:18646] [13] gmx_mpi(+0x61ea)[0x562cea8071ea]
1064
[gpu19:18646] *** End of error message ***
1065
[gpu19:18648] *** Process received signal ***
1066
[gpu19:18648] Signal: Segmentation fault (11)
1067
[gpu19:18648] Signal code: Address not mapped (1)
1068
[gpu19:18648] Failing at address: (nil)
1069
[gpu19:18648] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fee24e6cf20]
1070
[gpu19:18648] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fee1e11cf14]
1071
[gpu19:18648] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fee1d00b924]
1072
[gpu19:18648] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fee1d00f56e]
1073
[gpu19:18648] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fee1d2a305d]
1074
[gpu19:18648] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fee1b6f261f]
1075
[gpu19:18648] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fee1d267376]
1076
[gpu19:18648] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fee2580d238]
1077
[gpu19:18648] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fee2583b715]
1078
[gpu19:18648] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fee25c92305]
1079
[gpu19:18648] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fee260ce329]
1080
[gpu19:18648] [11] gmx_mpi(+0x60b2)[0x5623c770f0b2]
1081
[gpu19:18648] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fee24e4fb97]
1082
[gpu19:18648] [13] gmx_mpi(+0x61ea)[0x5623c770f1ea]
1083
[gpu19:18648] *** End of error message ***
1084
[gpu19:18651] *** Process received signal ***
1085
[gpu19:18651] Signal: Segmentation fault (11)
1086
[gpu19:18651] Signal code: Address not mapped (1)
1087
[gpu19:18651] Failing at address: (nil)
1088
[gpu19:18651] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f3ffdc1ef20]
1089
[gpu19:18651] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f3ff6ecef14]
1090
[gpu19:18651] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f3ff5dbd924]
1091
[gpu19:18651] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f3ff5dc156e]
1092
[gpu19:18651] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f3ff605505d]
1093
[gpu19:18651] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f3ff44a461f]
1094
[gpu19:18651] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f3ff6019376]
1095
[gpu19:18651] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f3ffe5bf238]
1096
[gpu19:18651] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f3ffe5ed715]
1097
[gpu19:18651] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f3ffea44305]
1098
[gpu19:18651] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f3ffee80329]
1099
[gpu19:18651] [11] gmx_mpi(+0x60b2)[0x56005acdd0b2]
1100
[gpu19:18651] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f3ffdc01b97]
1101
[gpu19:18651] [13] gmx_mpi(+0x61ea)[0x56005acdd1ea]
1102
[gpu19:18651] *** End of error message ***
1103
[gpu19:18649] *** Process received signal ***
1104
[gpu19:18649] Signal: Segmentation fault (11)
1105
[gpu19:18649] Signal code: Address not mapped (1)
1106
[gpu19:18649] Failing at address: (nil)
1107
[gpu19:18649] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f93079a5f20]
1108
[gpu19:18649] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f9300c55f14]
1109
[gpu19:18649] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f92ffb44924]
1110
[gpu19:18649] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f92ffb4856e]
1111
[gpu19:18649] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f92ffddc05d]
1112
[gpu19:18649] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f92fe22b61f]
1113
[gpu19:18649] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f92ffda0376]
1114
[gpu19:18649] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f9308346238]
1115
[gpu19:18649] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f9308374715]
1116
[gpu19:18649] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f93087cb305]
1117
[gpu19:18649] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f9308c07329]
1118
[gpu19:18649] [11] gmx_mpi(+0x60b2)[0x55a1a92280b2]
1119
[gpu19:18649] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f9307988b97]
1120
[gpu19:18649] [13] gmx_mpi(+0x61ea)[0x55a1a92281ea]
1121
[gpu19:18649] *** End of error message ***
1122
[gpu19:18650] *** Process received signal ***
1123
[gpu19:18650] Signal: Segmentation fault (11)
1124
[gpu19:18650] Signal code: Address not mapped (1)
1125
[gpu19:18650] Failing at address: (nil)
1126
[gpu19:18650] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f2392fcaf20]
1127
[gpu19:18650] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f238c27af14]
1128
[gpu19:18650] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f238b169924]
1129
[gpu19:18650] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f238b16d56e]
1130
[gpu19:18650] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f238b40105d]
1131
[gpu19:18650] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f238985061f]
1132
[gpu19:18650] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f238b3c5376]
1133
[gpu19:18650] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f239396b238]
1134
[gpu19:18650] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f2393999715]
1135
[gpu19:18650] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f2393df0305]
1136
[gpu19:18650] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f239422c329]
1137
[gpu19:18650] [11] gmx_mpi(+0x60b2)[0x55bff96bd0b2]
1138
[gpu19:18650] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f2392fadb97]
1139
[gpu19:18650] [13] gmx_mpi(+0x61ea)[0x55bff96bd1ea]
1140
[gpu19:18650] *** End of error message ***
1141
[gpu19:18652] *** Process received signal ***
1142
[gpu19:18652] Signal: Segmentation fault (11)
1143
[gpu19:18652] Signal code: Address not mapped (1)
1144
[gpu19:18652] Failing at address: (nil)
1145
[gpu19:18652] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f74003a7f20]
1146
[gpu19:18652] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f73f9657f14]
1147
[gpu19:18652] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f73f8546924]
1148
[gpu19:18652] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f73f854a56e]
1149
[gpu19:18652] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f73f87de05d]
1150
[gpu19:18652] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f73f6c2d61f]
1151
[gpu19:18652] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f73f87a2376]
1152
[gpu19:18652] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f7400d48238]
1153
[gpu19:18652] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f7400d76715]
1154
[gpu19:18652] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f74011cd305]
1155
[gpu19:18652] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f7401609329]
1156
[gpu19:18652] [11] gmx_mpi(+0x60b2)[0x55fad251b0b2]
1157
[gpu19:18652] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f740038ab97]
1158
[gpu19:18652] [13] gmx_mpi(+0x61ea)[0x55fad251b1ea]
1159
[gpu19:18652] *** End of error message ***
1160
[gpu19:18654] *** Process received signal ***
1161
[gpu19:18654] Signal: Segmentation fault (11)
1162
[gpu19:18654] Signal code: Address not mapped (1)
1163
[gpu19:18654] Failing at address: (nil)
1164
[gpu19:18654] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fe4060abf20]
1165
[gpu19:18654] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fe3ff35bf14]
1166
[gpu19:18654] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fe3fe24a924]
1167
[gpu19:18654] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fe3fe24e56e]
1168
[gpu19:18654] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fe3fe4e205d]
1169
[gpu19:18654] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fe3fc93161f]
1170
[gpu19:18654] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fe3fe4a6376]
1171
[gpu19:18654] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fe406a4c238]
1172
[gpu19:18654] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fe406a7a715]
1173
[gpu19:18654] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fe406ed1305]
1174
[gpu19:18654] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fe40730d329]
1175
[gpu19:18654] [11] gmx_mpi(+0x60b2)[0x55acddf0d0b2]
1176
[gpu19:18654] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fe40608eb97]
1177
[gpu19:18654] [13] gmx_mpi(+0x61ea)[0x55acddf0d1ea]
1178
[gpu19:18654] *** End of error message ***
1179
[gpu19:18653] *** Process received signal ***
1180
[gpu19:18653] Signal: Segmentation fault (11)
1181
[gpu19:18653] Signal code: Address not mapped (1)
1182
[gpu19:18653] Failing at address: (nil)
1183
[gpu19:18653] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f160033cf20]
1184
[gpu19:18653] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f15f95ecf14]
1185
[gpu19:18653] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f15f84db924]
1186
[gpu19:18653] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f15f84df56e]
1187
[gpu19:18653] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f15f877305d]
1188
[gpu19:18653] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f15f6bc261f]
1189
[gpu19:18653] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f15f8737376]
1190
[gpu19:18653] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f1600cdd238]
1191
[gpu19:18653] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f1600d0b715]
1192
[gpu19:18653] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f1601162305]
1193
[gpu19:18653] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f160159e329]
1194
[gpu19:18653] [11] gmx_mpi(+0x60b2)[0x563c9f9d10b2]
1195
[gpu19:18653] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f160031fb97]
1196
[gpu19:18653] [13] gmx_mpi(+0x61ea)[0x563c9f9d11ea]
1197
[gpu19:18653] *** End of error message ***
1198
[gpu19:18655] *** Process received signal ***
1199
[gpu19:18655] Signal: Segmentation fault (11)
1200
[gpu19:18655] Signal code: Address not mapped (1)
1201
[gpu19:18655] Failing at address: (nil)
1202
[gpu19:18655] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f6b8a30af20]
1203
[gpu19:18655] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f6b835baf14]
1204
[gpu19:18655] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f6b824a9924]
1205
[gpu19:18655] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f6b824ad56e]
1206
[gpu19:18655] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f6b8274105d]
1207
[gpu19:18655] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f6b80b9061f]
1208
[gpu19:18655] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f6b82705376]
1209
[gpu19:18655] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f6b8acab238]
1210
[gpu19:18655] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f6b8acd9715]
1211
[gpu19:18655] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f6b8b130305]
1212
[gpu19:18655] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f6b8b56c329]
1213
[gpu19:18655] [11] gmx_mpi(+0x60b2)[0x55842f0fd0b2]
1214
[gpu19:18655] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f6b8a2edb97]
1215
[gpu19:18655] [13] gmx_mpi(+0x61ea)[0x55842f0fd1ea]
1216
[gpu19:18655] *** End of error message ***
1217
[gpu19:18656] *** Process received signal ***
1218
[gpu19:18656] Signal: Segmentation fault (11)
1219
[gpu19:18656] Signal code: Address not mapped (1)
1220
[gpu19:18656] Failing at address: (nil)
1221
[gpu19:18656] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f21dd5a2f20]
1222
[gpu19:18656] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f21d6852f14]
1223
[gpu19:18656] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f21d5741924]
1224
[gpu19:18656] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f21d574556e]
1225
[gpu19:18656] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f21d59d905d]
1226
[gpu19:18656] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f21d3e2861f]
1227
[gpu19:18656] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f21d599d376]
1228
[gpu19:18656] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f21ddf43238]
1229
[gpu19:18656] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f21ddf71715]
1230
[gpu19:18656] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f21de3c8305]
1231
[gpu19:18656] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f21de804329]
1232
[gpu19:18656] [11] gmx_mpi(+0x60b2)[0x557c933bd0b2]
1233
[gpu19:18656] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f21dd585b97]
1234
[gpu19:18656] [13] gmx_mpi(+0x61ea)[0x557c933bd1ea]
1235
[gpu19:18656] *** End of error message ***
1236
[gpu20:18610] *** Process received signal ***
1237
[gpu20:18610] Signal: Segmentation fault (11)
1238
[gpu20:18610] Signal code: Address not mapped (1)
1239
[gpu20:18610] Failing at address: (nil)
1240
[gpu20:18610] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fe3a322bf20]
1241
[gpu20:18610] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fe39c4dbf14]
1242
[gpu20:18610] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fe39b3ca924]
1243
[gpu20:18610] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fe39b3ce56e]
1244
[gpu20:18610] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fe39b66205d]
1245
[gpu20:18610] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fe399ab161f]
1246
[gpu20:18610] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fe39b626376]
1247
[gpu20:18610] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fe3a3bcc238]
1248
[gpu20:18610] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fe3a3bfa715]
1249
[gpu20:18610] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fe3a4051305]
1250
[gpu20:18610] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fe3a448d329]
1251
[gpu20:18610] [11] gmx_mpi(+0x60b2)[0x556cdec600b2]
1252
[gpu20:18610] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fe3a320eb97]
1253
[gpu20:18610] [13] gmx_mpi(+0x61ea)[0x556cdec601ea]
1254
[gpu20:18610] *** End of error message ***
1255
[gpu20:18611] *** Process received signal ***
1256
[gpu20:18611] Signal: Segmentation fault (11)
1257
[gpu20:18611] Signal code: Address not mapped (1)
1258
[gpu20:18611] Failing at address: (nil)
1259
[gpu20:18611] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f3382568f20]
1260
[gpu20:18611] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f337b818f14]
1261
[gpu20:18611] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f337a707924]
1262
[gpu20:18611] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f337a70b56e]
1263
[gpu20:18611] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f337a99f05d]
1264
[gpu20:18611] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f3378dee61f]
1265
[gpu20:18611] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f337a963376]
1266
[gpu20:18611] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f3382f09238]
1267
[gpu20:18611] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f3382f37715]
1268
[gpu20:18611] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f338338e305]
1269
[gpu20:18611] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f33837ca329]
1270
[gpu20:18611] [11] gmx_mpi(+0x60b2)[0x55ddf395c0b2]
1271
[gpu20:18611] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f338254bb97]
1272
[gpu20:18611] [13] gmx_mpi(+0x61ea)[0x55ddf395c1ea]
1273
[gpu20:18611] *** End of error message ***
1274
[gpu20:18612] *** Process received signal ***
1275
[gpu20:18612] Signal: Segmentation fault (11)
1276
[gpu20:18612] Signal code: Address not mapped (1)
1277
[gpu20:18612] Failing at address: (nil)
1278
[gpu20:18612] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f0f4ee62f20]
1279
[gpu20:18612] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f0f48112f14]
1280
[gpu20:18612] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f0f47001924]
1281
[gpu20:18612] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f0f4700556e]
1282
[gpu20:18612] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f0f4729905d]
1283
[gpu20:18612] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f0f456e861f]
1284
[gpu20:18612] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f0f4725d376]
1285
[gpu20:18612] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f0f4f803238]
1286
[gpu20:18612] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f0f4f831715]
1287
[gpu20:18612] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f0f4fc88305]
1288
[gpu20:18612] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f0f500c4329]
1289
[gpu20:18612] [11] gmx_mpi(+0x60b2)[0x55fad79130b2]
1290
[gpu20:18612] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f0f4ee45b97]
1291
[gpu20:18612] [13] gmx_mpi(+0x61ea)[0x55fad79131ea]
1292
[gpu20:18612] *** End of error message ***
1293
[gpu20:18613] *** Process received signal ***
1294
[gpu20:18613] Signal: Segmentation fault (11)
1295
[gpu20:18613] Signal code: Address not mapped (1)
1296
[gpu20:18613] Failing at address: (nil)
1297
[gpu20:18613] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f88920ecf20]
1298
[gpu20:18613] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f888b39cf14]
1299
[gpu20:18613] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f888a28b924]
1300
[gpu20:18613] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f888a28f56e]
1301
[gpu20:18613] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f888a52305d]
1302
[gpu20:18613] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f888897261f]
1303
[gpu20:18613] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f888a4e7376]
1304
[gpu20:18613] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f8892a8d238]
1305
[gpu20:18613] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f8892abb715]
1306
[gpu20:18613] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f8892f12305]
1307
[gpu20:18613] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f889334e329]
1308
[gpu20:18613] [11] gmx_mpi(+0x60b2)[0x5585eb72f0b2]
1309
[gpu20:18613] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f88920cfb97]
1310
[gpu20:18613] [13] gmx_mpi(+0x61ea)[0x5585eb72f1ea]
1311
[gpu20:18613] *** End of error message ***
1312
[gpu20:18617] *** Process received signal ***
1313
[gpu20:18617] Signal: Segmentation fault (11)
1314
[gpu20:18617] Signal code: Address not mapped (1)
1315
[gpu20:18617] Failing at address: (nil)
1316
[gpu20:18617] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f67bea6df20]
1317
[gpu20:18617] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f67b7d1df14]
1318
[gpu20:18617] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f67b6c0c924]
1319
[gpu20:18617] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f67b6c1056e]
1320
[gpu20:18617] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f67b6ea405d]
1321
[gpu20:18617] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f67b52f361f]
1322
[gpu20:18617] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f67b6e68376]
1323
[gpu20:18617] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f67bf40e238]
1324
[gpu20:18617] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f67bf43c715]
1325
[gpu20:18617] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f67bf893305]
1326
[gpu20:18617] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f67bfccf329]
1327
[gpu20:18617] [11] gmx_mpi(+0x60b2)[0x5602aa88a0b2]
1328
[gpu20:18617] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f67bea50b97]
1329
[gpu20:18617] [13] gmx_mpi(+0x61ea)[0x5602aa88a1ea]
1330
[gpu20:18617] *** End of error message ***
1331
[gpu20:18639] *** Process received signal ***
1332
[gpu20:18639] Signal: Segmentation fault (11)
1333
[gpu20:18639] Signal code: Address not mapped (1)
1334
[gpu20:18639] Failing at address: (nil)
1335
[gpu20:18639] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7ff8412faf20]
1336
[gpu20:18639] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7ff83a5aaf14]
1337
[gpu20:18639] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7ff839499924]
1338
[gpu20:18639] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7ff83949d56e]
1339
[gpu20:18639] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7ff83973105d]
1340
[gpu20:18639] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7ff837b8061f]
1341
[gpu20:18639] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7ff8396f5376]
1342
[gpu20:18639] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7ff841c9b238]
1343
[gpu20:18639] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7ff841cc9715]
1344
[gpu20:18639] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7ff842120305]
1345
[gpu20:18639] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7ff84255c329]
1346
[gpu20:18639] [11] gmx_mpi(+0x60b2)[0x5572a2c9d0b2]
1347
[gpu20:18639] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7ff8412ddb97]
1348
[gpu20:18639] [13] gmx_mpi(+0x61ea)[0x5572a2c9d1ea]
1349
[gpu20:18639] *** End of error message ***
1350
[gpu20:18615] *** Process received signal ***
1351
[gpu20:18615] Signal: Segmentation fault (11)
1352
[gpu20:18615] Signal code: Address not mapped (1)
1353
[gpu20:18615] Failing at address: (nil)
1354
[gpu20:18615] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f403f571f20]
1355
[gpu20:18615] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f4038821f14]
1356
[gpu20:18615] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f4037710924]
1357
[gpu20:18615] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f403771456e]
1358
[gpu20:18615] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f40379a805d]
1359
[gpu20:18615] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f4035df761f]
1360
[gpu20:18615] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f403796c376]
1361
[gpu20:18615] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f403ff12238]
1362
[gpu20:18615] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f403ff40715]
1363
[gpu20:18615] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f4040397305]
1364
[gpu20:18615] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f40407d3329]
1365
[gpu20:18615] [11] gmx_mpi(+0x60b2)[0x55bc49a060b2]
1366
[gpu20:18615] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f403f554b97]
1367
[gpu20:18615] [13] gmx_mpi(+0x61ea)[0x55bc49a061ea]
1368
[gpu20:18615] *** End of error message ***
1369
[gpu20:18614] *** Process received signal ***
1370
[gpu20:18614] Signal: Segmentation fault (11)
1371
[gpu20:18614] Signal code: Address not mapped (1)
1372
[gpu20:18614] Failing at address: (nil)
1373
[gpu20:18614] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fc6d1300f20]
1374
[gpu20:18614] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fc6ca5b0f14]
1375
[gpu20:18614] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fc6c949f924]
1376
[gpu20:18614] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fc6c94a356e]
1377
[gpu20:18614] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fc6c973705d]
1378
[gpu20:18614] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fc6c7b8661f]
1379
[gpu20:18614] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fc6c96fb376]
1380
[gpu20:18614] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fc6d1ca1238]
1381
[gpu20:18614] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fc6d1ccf715]
1382
[gpu20:18614] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fc6d2126305]
1383
[gpu20:18614] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fc6d2562329]
1384
[gpu20:18614] [11] gmx_mpi(+0x60b2)[0x55bc8e5f90b2]
1385
[gpu20:18614] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fc6d12e3b97]
1386
[gpu20:18614] [13] gmx_mpi(+0x61ea)[0x55bc8e5f91ea]
1387
[gpu20:18614] *** End of error message ***
1388
[gpu20:18621] *** Process received signal ***
1389
[gpu20:18621] Signal: Segmentation fault (11)
1390
[gpu20:18621] Signal code: Address not mapped (1)
1391
[gpu20:18621] Failing at address: (nil)
1392
[gpu20:18621] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f9117d44f20]
1393
[gpu20:18621] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f9110ff4f14]
1394
[gpu20:18621] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f910fee3924]
1395
[gpu20:18621] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f910fee756e]
1396
[gpu20:18621] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f911017b05d]
1397
[gpu20:18621] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f910e5ca61f]
1398
[gpu20:18621] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f911013f376]
1399
[gpu20:18621] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f91186e5238]
1400
[gpu20:18621] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f9118713715]
1401
[gpu20:18621] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f9118b6a305]
1402
[gpu20:18621] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f9118fa6329]
1403
[gpu20:18621] [11] gmx_mpi(+0x60b2)[0x55e8007910b2]
1404
[gpu20:18621] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f9117d27b97]
1405
[gpu20:18621] [13] gmx_mpi(+0x61ea)[0x55e8007911ea]
1406
[gpu20:18621] *** End of error message ***
1407
[gpu20:18618] *** Process received signal ***
1408
[gpu20:18618] Signal: Segmentation fault (11)
1409
[gpu20:18618] Signal code: Address not mapped (1)
1410
[gpu20:18618] Failing at address: (nil)
1411
[gpu20:18618] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f748714bf20]
1412
[gpu20:18618] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f74803fbf14]
1413
[gpu20:18618] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f747f2ea924]
1414
[gpu20:18618] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f747f2ee56e]
1415
[gpu20:18618] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f747f58205d]
1416
[gpu20:18618] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f747d9d161f]
1417
[gpu20:18618] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f747f546376]
1418
[gpu20:18618] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f7487aec238]
1419
[gpu20:18618] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f7487b1a715]
1420
[gpu20:18618] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f7487f71305]
1421
[gpu20:18618] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f74883ad329]
1422
[gpu20:18618] [11] gmx_mpi(+0x60b2)[0x55a158d0b0b2]
1423
[gpu20:18618] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f748712eb97]
1424
[gpu20:18618] [13] gmx_mpi(+0x61ea)[0x55a158d0b1ea]
1425
[gpu20:18618] *** End of error message ***
1426
[gpu20:18620] *** Process received signal ***
1427
[gpu20:18620] Signal: Segmentation fault (11)
1428
[gpu20:18620] Signal code: Address not mapped (1)
1429
[gpu20:18620] Failing at address: (nil)
1430
[gpu20:18620] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f452d5f9f20]
1431
[gpu20:18620] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f45268a9f14]
1432
[gpu20:18620] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f4525798924]
1433
[gpu20:18620] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f452579c56e]
1434
[gpu20:18620] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f4525a3005d]
1435
[gpu20:18620] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f4523e7f61f]
1436
[gpu20:18620] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f45259f4376]
1437
[gpu20:18620] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f452df9a238]
1438
[gpu20:18620] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f452dfc8715]
1439
[gpu20:18620] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f452e41f305]
1440
[gpu20:18620] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f452e85b329]
1441
[gpu20:18620] [11] gmx_mpi(+0x60b2)[0x56115e2980b2]
1442
[gpu20:18620] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f452d5dcb97]
1443
[gpu20:18620] [13] gmx_mpi(+0x61ea)[0x56115e2981ea]
1444
[gpu20:18620] *** End of error message ***
1445
[gpu20:18619] *** Process received signal ***
1446
[gpu20:18619] Signal: Segmentation fault (11)
1447
[gpu20:18619] Signal code: Address not mapped (1)
1448
[gpu20:18619] Failing at address: (nil)
1449
[gpu20:18619] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f557aee4f20]
1450
[gpu20:18619] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f5574194f14]
1451
[gpu20:18619] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f5573083924]
1452
[gpu20:18619] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f557308756e]
1453
[gpu20:18619] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f557331b05d]
1454
[gpu20:18619] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f557176a61f]
1455
[gpu20:18619] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f55732df376]
1456
[gpu20:18619] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f557b885238]
1457
[gpu20:18619] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f557b8b3715]
1458
[gpu20:18619] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f557bd0a305]
1459
[gpu20:18619] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f557c146329]
1460
[gpu20:18619] [11] gmx_mpi(+0x60b2)[0x55f41112d0b2]
1461
[gpu20:18619] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f557aec7b97]
1462
[gpu20:18619] [13] gmx_mpi(+0x61ea)[0x55f41112d1ea]
1463
[gpu20:18619] *** End of error message ***
1464
[gpu20:18626] *** Process received signal ***
1465
[gpu20:18626] Signal: Segmentation fault (11)
1466
[gpu20:18626] Signal code: Address not mapped (1)
1467
[gpu20:18626] Failing at address: (nil)
1468
[gpu20:18626] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f3811dd7f20]
1469
[gpu20:18626] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f380b087f14]
1470
[gpu20:18626] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f3809f76924]
1471
[gpu20:18626] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f3809f7a56e]
1472
[gpu20:18626] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f380a20e05d]
1473
[gpu20:18626] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f380865d61f]
1474
[gpu20:18626] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f380a1d2376]
1475
[gpu20:18626] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f3812778238]
1476
[gpu20:18626] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f38127a6715]
1477
[gpu20:18626] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f3812bfd305]
1478
[gpu20:18626] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f3813039329]
1479
[gpu20:18626] [11] gmx_mpi(+0x60b2)[0x5599727400b2]
1480
[gpu20:18626] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f3811dbab97]
1481
[gpu20:18626] [13] gmx_mpi(+0x61ea)[0x5599727401ea]
1482
[gpu20:18626] *** End of error message ***
1483
[gpu20:18622] *** Process received signal ***
1484
[gpu20:18622] Signal: Segmentation fault (11)
1485
[gpu20:18622] Signal code: Address not mapped (1)
1486
[gpu20:18622] Failing at address: (nil)
1487
[gpu20:18622] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7efe531cff20]
1488
[gpu20:18622] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7efe4c47ff14]
1489
[gpu20:18622] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7efe4b36e924]
1490
[gpu20:18622] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7efe4b37256e]
1491
[gpu20:18622] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7efe4b60605d]
1492
[gpu20:18622] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7efe49a5561f]
1493
[gpu20:18622] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7efe4b5ca376]
1494
[gpu20:18622] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7efe53b70238]
1495
[gpu20:18622] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7efe53b9e715]
1496
[gpu20:18622] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7efe53ff5305]
1497
[gpu20:18622] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7efe54431329]
1498
[gpu20:18622] [11] gmx_mpi(+0x60b2)[0x5584cf9160b2]
1499
[gpu20:18622] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7efe531b2b97]
1500
[gpu20:18622] [13] gmx_mpi(+0x61ea)[0x5584cf9161ea]
1501
[gpu20:18622] *** End of error message ***
1502
[gpu20:18624] *** Process received signal ***
1503
[gpu20:18624] Signal: Segmentation fault (11)
1504
[gpu20:18624] Signal code: Address not mapped (1)
1505
[gpu20:18624] Failing at address: (nil)
1506
[gpu20:18624] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fd435d96f20]
1507
[gpu20:18624] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fd42f046f14]
1508
[gpu20:18624] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fd42df35924]
1509
[gpu20:18624] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fd42df3956e]
1510
[gpu20:18624] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fd42e1cd05d]
1511
[gpu20:18624] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fd42c61c61f]
1512
[gpu20:18624] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fd42e191376]
1513
[gpu20:18624] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fd436737238]
1514
[gpu20:18624] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fd436765715]
1515
[gpu20:18624] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fd436bbc305]
1516
[gpu20:18624] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fd436ff8329]
1517
[gpu20:18624] [11] gmx_mpi(+0x60b2)[0x556b4b3b10b2]
1518
[gpu20:18624] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fd435d79b97]
1519
[gpu20:18624] [13] gmx_mpi(+0x61ea)[0x556b4b3b11ea]
1520
[gpu20:18624] *** End of error message ***
1521
[gpu20:18623] *** Process received signal ***
1522
[gpu20:18623] Signal: Segmentation fault (11)
1523
[gpu20:18623] Signal code: Address not mapped (1)
1524
[gpu20:18623] Failing at address: (nil)
1525
[gpu20:18623] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f7ba3683f20]
1526
[gpu20:18623] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f7b9c933f14]
1527
[gpu20:18623] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f7b9b822924]
1528
[gpu20:18623] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f7b9b82656e]
1529
[gpu20:18623] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f7b9baba05d]
1530
[gpu20:18623] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f7b99f0961f]
1531
[gpu20:18623] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f7b9ba7e376]
1532
[gpu20:18623] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f7ba4024238]
1533
[gpu20:18623] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f7ba4052715]
1534
[gpu20:18623] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f7ba44a9305]
1535
[gpu20:18623] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f7ba48e5329]
1536
[gpu20:18623] [11] gmx_mpi(+0x60b2)[0x55a29374e0b2]
1537
[gpu20:18623] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f7ba3666b97]
1538
[gpu20:18623] [13] gmx_mpi(+0x61ea)[0x55a29374e1ea]
1539
[gpu20:18623] *** End of error message ***
1540
[gpu20:18631] *** Process received signal ***
1541
[gpu20:18631] Signal: Segmentation fault (11)
1542
[gpu20:18631] Signal code: Address not mapped (1)
1543
[gpu20:18631] Failing at address: (nil)
1544
[gpu20:18631] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f03fc334f20]
1545
[gpu20:18631] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f03f55e4f14]
1546
[gpu20:18631] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f03f44d3924]
1547
[gpu20:18631] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f03f44d756e]
1548
[gpu20:18631] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f03f476b05d]
1549
[gpu20:18631] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f03f2bba61f]
1550
[gpu20:18631] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f03f472f376]
1551
[gpu20:18631] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f03fccd5238]
1552
[gpu20:18631] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f03fcd03715]
1553
[gpu20:18631] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f03fd15a305]
1554
[gpu20:18631] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f03fd596329]
1555
[gpu20:18631] [11] gmx_mpi(+0x60b2)[0x55673cfb60b2]
1556
[gpu20:18631] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f03fc317b97]
1557
[gpu20:18631] [13] gmx_mpi(+0x61ea)[0x55673cfb61ea]
1558
[gpu20:18631] *** End of error message ***
1559
[gpu20:18627] *** Process received signal ***
1560
[gpu20:18627] Signal: Segmentation fault (11)
1561
[gpu20:18627] Signal code: Address not mapped (1)
1562
[gpu20:18627] Failing at address: (nil)
1563
[gpu20:18627] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f1d4dfc6f20]
1564
[gpu20:18627] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f1d47276f14]
1565
[gpu20:18627] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f1d46165924]
1566
[gpu20:18627] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f1d4616956e]
1567
[gpu20:18627] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f1d463fd05d]
1568
[gpu20:18627] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f1d4484c61f]
1569
[gpu20:18627] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f1d463c1376]
1570
[gpu20:18627] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f1d4e967238]
1571
[gpu20:18627] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f1d4e995715]
1572
[gpu20:18627] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f1d4edec305]
1573
[gpu20:18627] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f1d4f228329]
1574
[gpu20:18627] [11] gmx_mpi(+0x60b2)[0x561410b4e0b2]
1575
[gpu20:18627] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f1d4dfa9b97]
1576
[gpu20:18627] [13] gmx_mpi(+0x61ea)[0x561410b4e1ea]
1577
[gpu20:18627] *** End of error message ***
1578
[gpu20:18629] *** Process received signal ***
1579
[gpu20:18629] Signal: Segmentation fault (11)
1580
[gpu20:18629] Signal code: Address not mapped (1)
1581
[gpu20:18629] Failing at address: (nil)
1582
[gpu20:18629] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fec980eaf20]
1583
[gpu20:18629] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fec9139af14]
1584
[gpu20:18629] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fec90289924]
1585
[gpu20:18629] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fec9028d56e]
1586
[gpu20:18629] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fec9052105d]
1587
[gpu20:18629] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fec8e97061f]
1588
[gpu20:18629] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fec904e5376]
1589
[gpu20:18629] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fec98a8b238]
1590
[gpu20:18629] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fec98ab9715]
1591
[gpu20:18629] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fec98f10305]
1592
[gpu20:18629] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fec9934c329]
1593
[gpu20:18629] [11] gmx_mpi(+0x60b2)[0x55cd3b9af0b2]
1594
[gpu20:18629] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fec980cdb97]
1595
[gpu20:18629] [13] gmx_mpi(+0x61ea)[0x55cd3b9af1ea]
1596
[gpu20:18629] *** End of error message ***
1597
[gpu20:18625] *** Process received signal ***
1598
[gpu20:18625] Signal: Segmentation fault (11)
1599
[gpu20:18625] Signal code: Address not mapped (1)
1600
[gpu20:18625] Failing at address: (nil)
1601
[gpu20:18625] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f305ff9bf20]
1602
[gpu20:18625] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f305924bf14]
1603
[gpu20:18625] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f305813a924]
1604
[gpu20:18625] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f305813e56e]
1605
[gpu20:18625] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f30583d205d]
1606
[gpu20:18625] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f305682161f]
1607
[gpu20:18625] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f3058396376]
1608
[gpu20:18625] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f306093c238]
1609
[gpu20:18625] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f306096a715]
1610
[gpu20:18625] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f3060dc1305]
1611
[gpu20:18625] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f30611fd329]
1612
[gpu20:18625] [11] gmx_mpi(+0x60b2)[0x564cba5150b2]
1613
[gpu20:18625] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f305ff7eb97]
1614
[gpu20:18625] [13] gmx_mpi(+0x61ea)[0x564cba5151ea]
1615
[gpu20:18625] *** End of error message ***
1616
[gpu20:18633] *** Process received signal ***
1617
[gpu20:18633] Signal: Segmentation fault (11)
1618
[gpu20:18633] Signal code: Address not mapped (1)
1619
[gpu20:18633] Failing at address: (nil)
1620
[gpu20:18633] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f1f2785bf20]
1621
[gpu20:18633] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f1f20b0bf14]
1622
[gpu20:18633] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f1f1f9fa924]
1623
[gpu20:18633] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f1f1f9fe56e]
1624
[gpu20:18633] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f1f1fc9205d]
1625
[gpu20:18633] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f1f1e0e161f]
1626
[gpu20:18633] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f1f1fc56376]
1627
[gpu20:18633] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f1f281fc238]
1628
[gpu20:18633] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f1f2822a715]
1629
[gpu20:18633] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f1f28681305]
1630
[gpu20:18633] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f1f28abd329]
1631
[gpu20:18633] [11] gmx_mpi(+0x60b2)[0x55a4d6b2a0b2]
1632
[gpu20:18633] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f1f2783eb97]
1633
[gpu20:18633] [13] gmx_mpi(+0x61ea)[0x55a4d6b2a1ea]
1634
[gpu20:18633] *** End of error message ***
1635
[gpu20:18630] *** Process received signal ***
1636
[gpu20:18630] Signal: Segmentation fault (11)
1637
[gpu20:18630] Signal code: Address not mapped (1)
1638
[gpu20:18630] Failing at address: (nil)
1639
[gpu20:18630] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f6f0f35cf20]
1640
[gpu20:18630] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f6f0860cf14]
1641
[gpu20:18630] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f6f074fb924]
1642
[gpu20:18630] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f6f074ff56e]
1643
[gpu20:18630] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f6f0779305d]
1644
[gpu20:18630] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f6f05be261f]
1645
[gpu20:18630] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f6f07757376]
1646
[gpu20:18630] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f6f0fcfd238]
1647
[gpu20:18630] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f6f0fd2b715]
1648
[gpu20:18630] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f6f10182305]
1649
[gpu20:18630] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f6f105be329]
1650
[gpu20:18630] [11] gmx_mpi(+0x60b2)[0x56293710a0b2]
1651
[gpu20:18630] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f6f0f33fb97]
1652
[gpu20:18630] [13] gmx_mpi(+0x61ea)[0x56293710a1ea]
1653
[gpu20:18630] *** End of error message ***
1654
[gpu20:18634] *** Process received signal ***
1655
[gpu20:18634] Signal: Segmentation fault (11)
1656
[gpu20:18634] Signal code: Address not mapped (1)
1657
[gpu20:18634] Failing at address: (nil)
1658
[gpu20:18634] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f01e83a4f20]
1659
[gpu20:18634] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f01e1654f14]
1660
[gpu20:18634] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f01e0543924]
1661
[gpu20:18634] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f01e054756e]
1662
[gpu20:18634] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f01e07db05d]
1663
[gpu20:18634] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f01dec2a61f]
1664
[gpu20:18634] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f01e079f376]
1665
[gpu20:18634] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f01e8d45238]
1666
[gpu20:18634] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f01e8d73715]
1667
[gpu20:18634] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f01e91ca305]
1668
[gpu20:18634] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f01e9606329]
1669
[gpu20:18634] [11] gmx_mpi(+0x60b2)[0x556ce22eb0b2]
1670
[gpu20:18634] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f01e8387b97]
1671
[gpu20:18634] [13] gmx_mpi(+0x61ea)[0x556ce22eb1ea]
1672
[gpu20:18634] *** End of error message ***
1673
[gpu20:18628] *** Process received signal ***
1674
[gpu20:18628] Signal: Segmentation fault (11)
1675
[gpu20:18628] Signal code: Address not mapped (1)
1676
[gpu20:18628] Failing at address: (nil)
1677
[gpu20:18628] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f21189bef20]
1678
[gpu20:18628] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f2111c6ef14]
1679
[gpu20:18628] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f2110b5d924]
1680
[gpu20:18628] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f2110b6156e]
1681
[gpu20:18628] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f2110df505d]
1682
[gpu20:18628] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f210f24461f]
1683
[gpu20:18628] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f2110db9376]
1684
[gpu20:18628] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f211935f238]
1685
[gpu20:18628] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f211938d715]
1686
[gpu20:18628] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f21197e4305]
1687
[gpu20:18628] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f2119c20329]
1688
[gpu20:18628] [11] gmx_mpi(+0x60b2)[0x562910c1b0b2]
1689
[gpu20:18628] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f21189a1b97]
1690
[gpu20:18628] [13] gmx_mpi(+0x61ea)[0x562910c1b1ea]
1691
[gpu20:18628] *** End of error message ***
1692
[gpu20:18638] *** Process received signal ***
1693
[gpu20:18638] Signal: Segmentation fault (11)
1694
[gpu20:18638] Signal code: Address not mapped (1)
1695
[gpu20:18638] Failing at address: (nil)
1696
[gpu20:18638] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f9d36322f20]
1697
[gpu20:18638] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f9d2f5d2f14]
1698
[gpu20:18638] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f9d2e4c1924]
1699
[gpu20:18638] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f9d2e4c556e]
1700
[gpu20:18638] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f9d2e75905d]
1701
[gpu20:18638] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f9d2cba861f]
1702
[gpu20:18638] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f9d2e71d376]
1703
[gpu20:18638] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f9d36cc3238]
1704
[gpu20:18638] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f9d36cf1715]
1705
[gpu20:18638] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f9d37148305]
1706
[gpu20:18638] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f9d37584329]
1707
[gpu20:18638] [11] gmx_mpi(+0x60b2)[0x5637cef890b2]
1708
[gpu20:18638] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f9d36305b97]
1709
[gpu20:18638] [13] gmx_mpi(+0x61ea)[0x5637cef891ea]
1710
[gpu20:18638] *** End of error message ***
1711
[gpu20:18632] *** Process received signal ***
1712
[gpu20:18632] Signal: Segmentation fault (11)
1713
[gpu20:18632] Signal code: Address not mapped (1)
1714
[gpu20:18632] Failing at address: (nil)
1715
[gpu20:18632] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f930a277f20]
1716
[gpu20:18632] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f9303527f14]
1717
[gpu20:18632] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f9302416924]
1718
[gpu20:18632] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f930241a56e]
1719
[gpu20:18632] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f93026ae05d]
1720
[gpu20:18632] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f9300afd61f]
1721
[gpu20:18632] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f9302672376]
1722
[gpu20:18632] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f930ac18238]
1723
[gpu20:18632] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f930ac46715]
1724
[gpu20:18632] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f930b09d305]
1725
[gpu20:18632] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f930b4d9329]
1726
[gpu20:18632] [11] gmx_mpi(+0x60b2)[0x5600559f90b2]
1727
[gpu20:18632] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f930a25ab97]
1728
[gpu20:18632] [13] gmx_mpi(+0x61ea)[0x5600559f91ea]
1729
[gpu20:18632] *** End of error message ***
1730
[gpu20:18637] *** Process received signal ***
1731
[gpu20:18637] Signal: Segmentation fault (11)
1732
[gpu20:18637] Signal code: Address not mapped (1)
1733
[gpu20:18637] Failing at address: (nil)
1734
[gpu20:18637] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fa8a061af20]
1735
[gpu20:18637] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7fa8998caf14]
1736
[gpu20:18637] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7fa8987b9924]
1737
[gpu20:18637] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7fa8987bd56e]
1738
[gpu20:18637] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7fa898a5105d]
1739
[gpu20:18637] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7fa896ea061f]
1740
[gpu20:18637] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7fa898a15376]
1741
[gpu20:18637] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7fa8a0fbb238]
1742
[gpu20:18637] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7fa8a0fe9715]
1743
[gpu20:18637] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7fa8a1440305]
1744
[gpu20:18637] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7fa8a187c329]
1745
[gpu20:18637] [11] gmx_mpi(+0x60b2)[0x561eff40c0b2]
1746
[gpu20:18637] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fa8a05fdb97]
1747
[gpu20:18637] [13] gmx_mpi(+0x61ea)[0x561eff40c1ea]
1748
[gpu20:18637] *** End of error message ***
1749
[gpu20:18635] *** Process received signal ***
1750
[gpu20:18635] Signal: Segmentation fault (11)
1751
[gpu20:18635] Signal code: Address not mapped (1)
1752
[gpu20:18635] Failing at address: (nil)
1753
[gpu20:18635] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f47e5c59f20]
1754
[gpu20:18635] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f47def09f14]
1755
[gpu20:18635] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f47dddf8924]
1756
[gpu20:18635] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f47dddfc56e]
1757
[gpu20:18635] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f47de09005d]
1758
[gpu20:18635] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f47dc4df61f]
1759
[gpu20:18635] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f47de054376]
1760
[gpu20:18635] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f47e65fa238]
1761
[gpu20:18635] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f47e6628715]
1762
[gpu20:18635] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f47e6a7f305]
1763
[gpu20:18635] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f47e6ebb329]
1764
[gpu20:18635] [11] gmx_mpi(+0x60b2)[0x560cb633d0b2]
1765
[gpu20:18635] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f47e5c3cb97]
1766
[gpu20:18635] [13] gmx_mpi(+0x61ea)[0x560cb633d1ea]
1767
[gpu20:18635] *** End of error message ***
1768
[gpu20:18641] *** Process received signal ***
1769
[gpu20:18641] Signal: Segmentation fault (11)
1770
[gpu20:18641] Signal code: Address not mapped (1)
1771
[gpu20:18641] Failing at address: (nil)
1772
[gpu20:18641] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f11f1da0f20]
1773
[gpu20:18641] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f11eb050f14]
1774
[gpu20:18641] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f11e9f3f924]
1775
[gpu20:18641] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f11e9f4356e]
1776
[gpu20:18641] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f11ea1d705d]
1777
[gpu20:18641] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f11e862661f]
1778
[gpu20:18641] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f11ea19b376]
1779
[gpu20:18641] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f11f2741238]
1780
[gpu20:18641] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f11f276f715]
1781
[gpu20:18641] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f11f2bc6305]
1782
[gpu20:18641] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f11f3002329]
1783
[gpu20:18641] [11] gmx_mpi(+0x60b2)[0x557ecea4c0b2]
1784
[gpu20:18641] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f11f1d83b97]
1785
[gpu20:18641] [13] gmx_mpi(+0x61ea)[0x557ecea4c1ea]
1786
[gpu20:18641] *** End of error message ***
1787
[gpu20:18636] *** Process received signal ***
1788
[gpu20:18636] Signal: Segmentation fault (11)
1789
[gpu20:18636] Signal code: Address not mapped (1)
1790
[gpu20:18636] Failing at address: (nil)
1791
[gpu20:18636] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f4c8e026f20]
1792
[gpu20:18636] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f4c872d6f14]
1793
[gpu20:18636] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f4c861c5924]
1794
[gpu20:18636] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f4c861c956e]
1795
[gpu20:18636] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f4c8645d05d]
1796
[gpu20:18636] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f4c848ac61f]
1797
[gpu20:18636] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f4c86421376]
1798
[gpu20:18636] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f4c8e9c7238]
1799
[gpu20:18636] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f4c8e9f5715]
1800
[gpu20:18636] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f4c8ee4c305]
1801
[gpu20:18636] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f4c8f288329]
1802
[gpu20:18636] [11] gmx_mpi(+0x60b2)[0x555e7ad150b2]
1803
[gpu20:18636] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f4c8e009b97]
1804
[gpu20:18636] [13] gmx_mpi(+0x61ea)[0x555e7ad151ea]
1805
[gpu20:18636] *** End of error message ***
1806
[gpu20:18640] *** Process received signal ***
1807
[gpu20:18640] Signal: Segmentation fault (11)
1808
[gpu20:18640] Signal code: Address not mapped (1)
1809
[gpu20:18640] Failing at address: (nil)
1810
[gpu20:18640] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f56605bdf20]
1811
[gpu20:18640] [ 1] /opt/tcbsys/hwloc/2.0.2/lib/libhwloc.so.15(hwloc_bitmap_and+0x14)[0x7f565986df14]
1812
[gpu20:18640] [ 2] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_filter_cpus+0x374)[0x7f565875c924]
1813
[gpu20:18640] [ 3] /opt/tcbsys/openmpi/4.0.0/lib/libopen-pal.so.40(opal_hwloc_base_get_topology+0x3be)[0x7f565876056e]
1814
[gpu20:18640] [ 4] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_ess_base_proc_binding+0x72d)[0x7f56589f405d]
1815
[gpu20:18640] [ 5] /opt/tcbsys/openmpi/4.0.0/lib/openmpi/mca_ess_pmi.so(+0x361f)[0x7f5656e4361f]
1816
[gpu20:18640] [ 6] /opt/tcbsys/openmpi/4.0.0/lib/libopen-rte.so.40(orte_init+0x286)[0x7f56589b8376]
1817
[gpu20:18640] [ 7] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(ompi_mpi_init+0x2d8)[0x7f5660f5e238]
1818
[gpu20:18640] [ 8] /opt/tcbsys/openmpi/4.0.0/lib/libmpi.so.40(PMPI_Init_thread+0x55)[0x7f5660f8c715]
1819
[gpu20:18640] [ 9] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx4initEPiPPPc+0xa5)[0x7f56613e3305]
1820
[gpu20:18640] [10] /opt/tcbsys/gromacs/2020.1/AVX2_256/lib/libgromacs_mpi.so.5(_ZN3gmx18initForCommandLineEPiPPPc+0x29)[0x7f566181f329]
1821
[gpu20:18640] [11] gmx_mpi(+0x60b2)[0x555d7fb5a0b2]
1822
[gpu20:18640] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f56605a0b97]
1823
[gpu20:18640] [13] gmx_mpi(+0x61ea)[0x555d7fb5a1ea]
1824
[gpu20:18640] *** End of error message ***
1825
--------------------------------------------------------------------------
1826
Primary job  terminated normally, but 1 process returned
1827
a non-zero exit code. Per user-direction, the job has been aborted.
1828
--------------------------------------------------------------------------
1829
--------------------------------------------------------------------------
1830
mpirun noticed that process rank 13 with PID 18907 on node gpu18 exited on signal 11 (Segmentation fault).
1831
--------------------------------------------------------------------------