Project

General

Profile

Feature #2911

grompp cryptic error message

Added by Cathrine Bergh 6 months ago. Updated 3 months ago.

Status:
Closed
Priority:
Low
Assignee:
Category:
preprocessing (pdb2gmx,grompp)
Target version:
Difficulty:
simple
Close

Description

I got a syntax error from one of my files when running grompp. The message was a bit cryptic. Would it be possible to specify e.g. what character caused the problem? The solution was to change ' into ", but that took a while to realize...

-------------------------------------------------------
Program: gmx grompp, version 2018
Source file: src/gromacs/gmxpreprocess/topio.cpp (line 705)

Fatal error:
Syntax error - File topol_Protein_chain_B.itp, line 56256
Last line read:
'#include 'posre_Protein_chain_B.itp' '

For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
-------------------------------------------------------

Associated revisions

Revision 77e2a317 (diff)
Added by Paul Bauer 3 months ago

Extend information for gmxcpp syntax error.

Fixes #2911

Change-Id: I6d22c95d32993d5d640bf20031bfdc9c04c99604

History

#1 Updated by Paul Bauer 4 months ago

  • Status changed from New to Fix uploaded
  • Target version set to 2019.3

#2 Updated by Paul Bauer 4 months ago

@Cathrine, do you still have the input to check that you get the new error message with this?

#3 Updated by Mark Abraham 3 months ago

  • Status changed from Fix uploaded to Resolved

#4 Updated by Paul Bauer 3 months ago

#5 Updated by Paul Bauer 3 months ago

  • Status changed from Resolved to Closed

Also available in: Atom PDF