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Peter Stern

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11/22/2007

11:49 AM GROMACS Bug #178: mdrun crashes with segmentation fault when using harmonic position restraints
OK. I got it to work after compiling only bondfree with -O2.
I guess I didn't do it right the first time. Thanks ag...

11/21/2007

03:36 PM GROMACS Bug #178: mdrun crashes with segmentation fault when using harmonic position restraints
I tried compiling just bondfree with -O2 but that didn't work.
Using CFLAGS="-O2" did solve the problem, however. So...
09:24 AM GROMACS Bug #178: mdrun crashes with segmentation fault when using harmonic position restraints
Dear David:
Yes, it works just fine for me using the gcc 4.1.0 compiler on an x86_64 system
(SLES 10) as I already s...
09:13 AM GROMACS Bug #178: mdrun crashes with segmentation fault when using harmonic position restraints
Dear Erik:
Here is where it crashes:
Program received signal SIGSEGV, Segmentation fault.
0x080ae4fd in spread_on_gr...
08:51 AM GROMACS Bug #178: mdrun crashes with segmentation fault when using harmonic position restraints
For me it crashes immediately, after a few seconds. I get:
Getting Loaded...
Reading file topol.tpr, VERSION 3.3.2 (...

11/18/2007

10:58 AM GROMACS Bug #178 (Closed): mdrun crashes with segmentation fault when using harmonic position restraints
Created an attachment (id=258)
Input to mdrun
I built gromacs-3.3.2 with gcc v4.2.2 and linked against fftw-3.1.2 on...

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