Magnus Lundborg
- Registered on: 03/12/2013
- Last connection: 03/20/2020
Issues
- Assigned issues: 11
- Reported issues: 32
Projects
- GROMACS (Developer, 03/17/2013)
- Next-generation analysis tools (Developer, 05/18/2013)
- Source code reorganization (Developer, 05/18/2013)
- TNG trajectory library (Manager, 03/18/2013)
Activity
03/04/2020
- 10:40 PM GROMACS Revision 54d5fee7: Separate AWH parameter reading and checking
- To avoid dependency on order of parameter reading (pulling
before AWH) AWH now reads parameters before checking them....
03/03/2020
- 10:37 AM GROMACS Revision 439bff03: Store dHdL for all neighbor lambdas
- This is required for calculating forces along a lambda dimension
in AWH.
Change-Id: Ic5247a53998b1e733858419d20338b5...
03/01/2020
- 01:35 PM GROMACS Feature #2667: Suggested steps for calculating entropy in solution and binding
- I don't know. I just requested this feature since I don't know the proper process and people wonder on different mail...
02/25/2020
- 06:43 PM GROMACS Revision ade8e131: Fix out of sync checkpoint files in simulations sharing state
- When multidir simulations share the state, the checkpoint files
of the different simulations should all be from the s...
02/17/2020
- 03:58 PM GROMACS Feature #3117: Coulomb FEP PME on GPU
- Yes, with an average over 3 runs (1000 steps) I think 47.3 ns/day vs 47.5 ns/day is just noise.
- 10:36 AM GROMACS Feature #3117: Coulomb FEP PME on GPU
- That could of course be good, but since it doesn't run FEP (as far as I could see from a quick read) it will need som...
02/15/2020
- 04:56 PM GROMACS Bug #2440 (Accepted): Multidir simulations can stop at different times when using mdrun -maxh
- This still happens in 2019.5, so I am opening this again. I am not sure if it is related to -maxh or just when jobs g...
02/06/2020
- 02:20 PM GROMACS Feature #3371 (New): Control FEP using AWH
- Using FEP as one AWH bias coordinate makes it possible to efficiently perform free energy calculations and also to co...
01/29/2020
- 06:14 PM GROMACS Revision f349f902: More SIMD preparations in the FE calculations
- Prepare the launch of the FE kernel using SIMD. So far the kernel
is not modified to actually use SIMD.
Change-Id: I...
01/24/2020
- 08:30 PM GROMACS Task #3253 (Resolved): Remove support for free-energy soft-core power 48
- Applied in changeset commit:7064faa9a2d967a34df366ec97b304bd79ef8b32.
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